Scaffold Ga0315907_10001453

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001453
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31968
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (25.93%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F024318	Metagenome	206	Y
F034898	Metagenome / Metatranscriptome	173	Y
F048316	Metagenome / Metatranscriptome	148	Y
F099147	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000145310	F001775	GAGG	MRHLLDDERIRIAVISFLIGVILAFVVFPRPEFETVYKTEIKTETDTVFVSQKDTIYVPKTKIKTEVLRDTVLIDFKPKISQFNASFPFEYGSTNVSGEVLGEVLKMTATNDYKIPVVTNTITETKTETIIKKSKGIYLGANVNSLLQPSANVSYLDNKYLFSYQYQPLQRVHQIGVSKKLF
Ga0315907_1000145312	F008081	N/A	MDETQVLNPFGYGNASRVIDENRKPAEWYWDYLEFNEVFAENEFYVLFSDGLLVKKGRSKFRTSQYLKGERFTSFKKVYERL
Ga0315907_1000145319	F024318	N/A	MKYLGKEIQRPGDLTPKGIRSTYQTEKLPFNETFERLWQLSNTKN
Ga0315907_1000145324	F034898	N/A	MTKEEIVKELQFRATQKYLIYLALQEIMLDNYEDCTFLKDYDHDLTVKHKNIINSLKRNATKAFRFLEGYDEGEATIKQFHDFVKLFELIHEGIDRGGGVYNECLNAVEKILDKDAEIYGNGGGGNAKPLA
Ga0315907_1000145327	F008073	N/A	MKETIIKHLKKMEFVCGLKQFKEYKKEEATELINCLHDLFKKFGWMTEQRVDYILQAGMRGQYGDFYHVNEKTVNGWITQYYQHHQSQIVMEIQNQNNKGKEPSAEEIAYWIEVGKNIFRENYQHAKDTGYCLDLAEWGINWFNKFQEKGILKPWTFNVEEIEQDVRKELRLTKHWVEESTVGAKSKNKIWKLFILESIRENRNLDKLI
Ga0315907_100014533	F014605	N/A	MKVNLAIEIKDIEGNPLQGEPMLLSKLVGNALFTAEEKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKDKVKAKGFTVLVLAPLFEALSDK
Ga0315907_1000145332	F005529	N/A	MAKQLPKSKPDYSLEIRYRLRDGQWSPWSNKGKGYFMSMEIVQRQIRLIAAAYQGREKEVKFEWNGKLCDFTGNPTGKVIELK
Ga0315907_1000145344	F099147	N/A	MIKLLVDLVPFEKGEVICVGKTYNTYLVDKGLAVWIKVDKKEFKTK
Ga0315907_100014536	F048316	GAGG	MKRFFSWSKGFFSENGEASSKRLVGVASGITLCITLFLNQNEPLVYSVAALSAAALGITAAEKIFKKPNNENKS