NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099147

Metagenome / Metatranscriptome Family F099147

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099147
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 45 residues
Representative Sequence MIKLLVDLEPFQKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFKKK
Number of Associated Samples 75
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.97 %
% of genes near scaffold ends (potentially truncated) 28.16 %
% of genes from short scaffolds (< 2000 bps) 70.87 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (56.311 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(15.534 % of family members)
Environment Ontology (ENVO) Unclassified
(44.660 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(46.602 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66
1BBAY94_100371804
2B570J29032_1092692613
3B570J29032_1098570604
4B570J40625_10000319118
5B570J40625_10001999210
6B570J40625_1011226551
7JGI25909J50240_11240921
8Ga0069718_149583252
9Ga0049081_102470472
10Ga0079957_10234274
11Ga0079957_12110011
12Ga0074477_11820834
13Ga0098073_10067304
14Ga0070749_100564532
15Ga0070749_101967101
16Ga0070748_10640382
17Ga0070748_11939542
18Ga0099851_10023678
19Ga0099846_10196556
20Ga0099846_13300351
21Ga0114341_102179723
22Ga0114876_100147714
23Ga0114876_11573542
24Ga0114880_10701293
25Ga0114880_11096252
26Ga0105105_102978442
27Ga0105105_107422712
28Ga0102829_10370892
29Ga0105099_103887473
30Ga0105103_105474302
31Ga0105103_106266272
32Ga0105102_100039695
33Ga0105102_100493882
34Ga0105102_103366352
35Ga0105102_105148851
36Ga0105102_106091622
37Ga0105097_101467721
38Ga0153697_15185
39Ga0153703_130831
40Ga0157630_10486351
41Ga0157625_10323252
42Ga0164293_100171464
43Ga0164293_100414749
44Ga0177922_105486673
45Ga0181365_10506264
46Ga0181344_11666892
47Ga0181344_12370132
48Ga0181358_10727762
49Ga0181346_10147911
50Ga0181346_10405635
51Ga0180438_111049911
52Ga0181359_10933392
53Ga0211734_107312342
54Ga0211735_101636612
55Ga0194118_101768183
56Ga0208050_10182292
57Ga0208232_10008109
58Ga0208233_10369212
59Ga0208228_10306402
60Ga0207941_10160731
61Ga0207942_10417181
62Ga0194122_103186472
63Ga0222714_1000138926
64Ga0222714_100031894
65Ga0196901_10725432
66Ga0181351_10615332
67Ga0181351_11225261
68Ga0255141_10222183
69Ga0255252_10022028
70Ga0208018_1174152
71Ga0208147_11012082
72Ga0208161_10073874
73Ga0208795_10874763
74Ga0208795_11630352
75Ga0255247_10201681
76Ga0208644_12285042
77Ga0255253_10168844
78Ga0255124_10738322
79Ga0209704_10001426
80Ga0209704_10054232
81Ga0209704_10141882
82Ga0209704_10447442
83Ga0209704_11239652
84Ga0209246_100012391
85Ga0209353_1000531310
86Ga0255254_10023031
87Ga0307380_104600462
88Ga0315907_1000145344
89Ga0315274_118902152
90Ga0315903_107733373
91Ga0315903_109378661
92Ga0334981_0312067_4_132
93Ga0334982_0246841_613_753
94Ga0334982_0429810_161_301
95Ga0334994_0056971_963_1103
96Ga0335003_0106800_1039_1179
97Ga0334979_0025358_1989_2129
98Ga0334979_0483968_3_131
99Ga0334998_0266588_305_445
100Ga0334995_0224498_417_557
101Ga0335031_0324943_272_412
102Ga0335051_0004055_1317_1457
103Ga0335058_0600322_239_379
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.27%    β-sheet: 0.00%    Coil/Unstructured: 79.73%
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Position

Original

Variant

51015202530354045MIKLLVDLEPFQKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFKKKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
60.2%39.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Sediment
Freshwater Sediment
Freshwater
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater
Lake
Sediment
Freshwater
Freshwater
Freshwater
Marine
Aqueous
Estuarine
Estuarine Water
Hypersaline Lake Sediment
Sediment (Intertidal)
Soil
Macroalgal Surface
15.5%8.7%11.7%15.5%5.8%2.9%2.9%5.8%12.6%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
BBAY94_1003718043300000949Macroalgal SurfaceIFMIKLLIDLAPFEKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKIKTK*
B570J29032_10926926133300002408FreshwaterLAPVEKGEVLSVGKTYDTYLVEKGMAVWVKVDKEKIKTK*
B570J29032_10985706043300002408FreshwaterMIKLLIDLAPFEKGEVLSVGKTYDTYLVEKGMAVWVKVDKQDYKKK*
B570J40625_100003191183300002835FreshwaterMIKLLVDLAPFHKDEVISVGKTYDTYLVNKGLAIWVKMDKQEIKTK*
B570J40625_100019992103300002835FreshwaterMIKLLIDLAPFQKGEILTVGKTYDTYLVDKGLAVWIKVDKQDYKKK*
B570J40625_10112265513300002835FreshwaterMIKLLIDLAPFEKGEVLSVGKTYDTYLVEKGMAVWVKVDKEKIKTK*
JGI25909J50240_112409213300003393Freshwater LakeINSIFMIKLLVDLEPFKKDEILSVGKTYDTYLVDKGLAVWIKVDKQDYKKK*
Ga0069718_1495832523300004481SedimentMIKLLVDLVPFEKGEILSVGKTYDTYLVDKGLAVWIKVDKQEIKKK*
Ga0049081_1024704723300005581Freshwater LenticMIKLLVDLVPFEKGEIICVGKTYNTYLVDKGLAVWIKVEKQDFKTK*
Ga0079957_102342743300005805LakeMIKLLVDLEPFRKGEILSVGKTYDAYLVDKGLAVWIKVDKQDFEKK*
Ga0079957_121100113300005805LakePFQKGEILTVGKTYDTYLVDKGLAVWIKVDKQEIKTK*
Ga0074477_118208343300005826Sediment (Intertidal)MVKLLVDLVPFEKGEIITVGKIYDTYLVEKGLAVWIKVQKQDFKKK*
Ga0098073_100673043300006734MarineMIKLLIDLAPFEKGEVLSVGKTYDSYLVDKGLAVWVKVNKEKIKTK*
Ga0070749_1005645323300006802AqueousMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKMDKQDFKKK*
Ga0070749_1019671013300006802AqueousMIKLLVDLVPFEKGEVICVGKTYNTYLVDKGLAVWIKVDKKEFKTK*
Ga0070748_106403823300006920AqueousMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKMDKQDYKKK*
Ga0070748_119395423300006920AqueousMIKLLIDLAPFEKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKIKTK*
Ga0099851_100236783300007538AqueousMIKLLVDLEPFQKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFKKK*
Ga0099846_101965563300007542AqueousMIKLLVDLEPFQKGEILSVGKTYDTYLVDKGLAVWIKVDIQDFKKK*
Ga0099846_133003513300007542AqueousKAFNEINSIFMIKLLVDLEPFRKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFEKK*
Ga0114341_1021797233300008108Freshwater, PlanktonMIKLLVDLEPFRKGEILSVGKTYDTYLVDKGLAVWIKVDKKDFEKK*
Ga0114876_1001477143300008448Freshwater LakeMIKLLIDLAPFQKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKFKTK*
Ga0114876_115735423300008448Freshwater LakeMIKLLTDIEPFKEGEVLSVGKTIDSYLVRKGLAVWVKVSKPQYRTK*
Ga0114880_107012933300008450Freshwater LakeMIKLLVDLVPFEKGEIICVGKTYNTYLVNKGLAVWIKVEKQDFKTK*
Ga0114880_110962523300008450Freshwater LakeMIKLLIDYQPFTKGEVLTFGKEKDAQLVEKGLAVWVKISDLNFKKK*
Ga0105105_1029784423300009009Freshwater SedimentMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKMDKQEIKTK*
Ga0105105_1074227123300009009Freshwater SedimentMIKLLIDLAPFEKGEVLSVGKTYDTYLVDKGMAVWVKMDKEKIKTK*
Ga0102829_103708923300009026EstuarineMIKLLVDLSPFQKGEVLTVGKTYDTYLVDKGLAVWVKMNKQEIKTK*
Ga0105099_1038874733300009082Freshwater SedimentIFMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKMDKQEIKTK*
Ga0105103_1054743023300009085Freshwater SedimentDLAPFMKGEVLSVGKTYDTYLVDKGMAVWVKVDKQDYKKK*
Ga0105103_1062662723300009085Freshwater SedimentMIKLLIDLVPFEKGEIITVGKTYDTYLVNKGMAVWVKVDKQEIKTK*
Ga0105102_1000396953300009165Freshwater SedimentLESEKTFNEINTIFMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKVDKEKFKTK
Ga0105102_1004938823300009165Freshwater SedimentMIKLLIDLAPFQKGEVLSVGKTYDTYLVDKGMAVWVKVDKQDYKKK*
Ga0105102_1033663523300009165Freshwater SedimentMIKLLIDLAPFMKGEVLSVGKTYDTYLVEKGMAVWVKVDKEKIKTK*
Ga0105102_1051488513300009165Freshwater SedimentMIKLLIDLAPFQKGEILTVGKTYDTYLVDKGLAVWVKMDKQDFKTK*
Ga0105102_1060916223300009165Freshwater SedimentMIKLLVDLAPFHKGEVISVGKTYDTYLVDKGLAVWVKIDKQEIKTK*
Ga0105097_1014677213300009169Freshwater SedimentMIKLLVDLEPFRKGEILSVGKTYDTYLVDKGMAVWVKVDKQDYKKK*
Ga0153697_151853300011334FreshwaterMIKLLVDLEPFRKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFEKK*
Ga0153703_1308313300011336FreshwaterDLEPFQKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFKKK*
Ga0157630_104863513300012722FreshwaterKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKIKTK*
Ga0157625_103232523300012729FreshwaterMIKLLIDLAPFQKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKIKTK*
Ga0164293_1001714643300013004FreshwaterMIKLLVDLAPFQKGEVISVGKTYDTYLVNKGLAIWVKMDKQEIKTK*
Ga0164293_1004147493300013004FreshwaterMIKLLIDLEPFRKGEILTVGKTYDTYLVDKGLAIWIKVDKQEIKTK*
Ga0177922_1054866733300013372FreshwaterMIKLLVDLEPFKKDEILSVGKTYDTYLVNNGLAVWIKMDKQDYKKK*
Ga0181365_105062643300017736Freshwater LakeVDLEPFKKDEILSVGKTYDTYLVDKGLAVWIKVDKQDYKKK
Ga0181344_116668923300017754Freshwater LakeMIKLLIDLAPFQKGEILTVGKTYDTYLVDKGLAVWIKVD
Ga0181344_123701323300017754Freshwater LakeMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKMDKQDFK
Ga0181358_107277623300017774Freshwater LakeMIKLLVDLSPFEKGEVISVGKTYDTYLVDKGLAVWVKMDKQDYKKK
Ga0181346_101479113300017780Freshwater LakeSIFMIKLLVDLSPFQKGEVLTVGKTYDTYLVDKGLAVWVKMNKQEIKTK
Ga0181346_104056353300017780Freshwater LakeIFMIKLLVDLEPFKKDEILTVGKTYDTYLVDKGLAVWIKVDKQDYKKK
Ga0180438_1110499113300017971Hypersaline Lake SedimentMIKLLIDLAPFEKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKIKTK
Ga0181359_109333923300019784Freshwater LakeMIKLLVDLEPFKKDEILSVGKTYDTYLVNNGLAVWIKMDKQDYKKK
Ga0211734_1073123423300020159FreshwaterMIKLLEDLIPFEKGEIICVGKTYNTYLVNKGLAVWIKVDKEEIKKK
Ga0211735_1016366123300020162FreshwaterMIKLLVDLEPFQKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFKKK
Ga0194118_1017681833300020190Freshwater LakeMIKLLVDLVPFQKGEIICVGKTYNTYLVNKGLAVWIKVEKQDFKTK
Ga0208050_101822923300020498FreshwaterMIKLLVDLTPFHKGEVLSVGKTYDTYLVDKGLAVWVKMDKQEIKTK
Ga0208232_100081093300020527FreshwaterMIKLLVDLAPFHKDEVISVGKTYDTYLVNKGLAIWVKMDKQEIKTK
Ga0208233_103692123300020529FreshwaterMIKLLIDLAPFEKGEVLSVGKTYDTYLVEKGMAVWVKVDKQDYKKK
Ga0208228_103064023300020535FreshwaterMIKLLIDLAPFEKGEVLSVGKTYDTYLVEKGMAVWVKVDKEKIKTK
Ga0207941_101607313300020539FreshwaterGIFMIKLLIDLAPFEKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKIKTK
Ga0207942_104171813300020549FreshwaterMIKLLIDLAPFEKGEVLSVGKTYDTYLVEKGMAVWV
Ga0194122_1031864723300021092Freshwater LakeMIKLLVDLVPFQKGEIICVGKTYNTYLVNKGLAVWIKVEKQ
Ga0222714_10001389263300021961Estuarine WaterMIKLLVDLEPFQKGEILSVGKTYDAYLVDKGLAVWIKVDKQDFKKK
Ga0222714_1000318943300021961Estuarine WaterMIKLLVDLEPFRKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFEKK
Ga0196901_107254323300022200AqueousMIKLLVDLEPFKKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFEKK
Ga0181351_106153323300022407Freshwater LakeMIKLLVDLAPFQKGEVISVGKTYDTYLVDKGLAVWVKMDKQEIKKK
Ga0181351_112252613300022407Freshwater LakeTFNEINSIFMIKLLVDLEPFKKDEILSVGKTYDTYLVDKGLAVWIKVDKQDYKKK
Ga0255141_102221833300024351FreshwaterMIKLLVDLVPFEKGEIICVGKTYNTYLVNKGLAVWIKVEKQDFKTK
Ga0255252_100220283300024853FreshwaterLIPFEKGEIICVGKTYNTYLVNKGLAVWIKVDKEEIKKK
Ga0208018_11741523300025057MarineMIKLLIDLAPFEKGEVLSVGKTYDSYLVDKGLAVWVKVNKEKIKTK
Ga0208147_110120823300025635AqueousMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKMDKQDFKKK
Ga0208161_100738743300025646AqueousMIKLLIDLAPFEKGEILSVGKTYDEYLVNKGMAVWVKVDKEKIKTK
Ga0208795_108747633300025655AqueousMIKLLVDLEPFQKGEILSVGKTYDTYLVDKGLAVWI
Ga0208795_116303523300025655AqueousTFNEINTIFMIKLLVDLEPFQKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFKKK
Ga0255247_102016813300025747FreshwaterDLIPFEKGEIICVGKTYNTYLVNKGLAVWIKVDKEEIKKK
Ga0208644_122850423300025889AqueousMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKMDKQDFKKKXARLDL
Ga0255253_101688443300026429FreshwaterFEKGEIICVGKTYNTYLVNKGLAVWIKVDKEEIKKK
Ga0255124_107383223300027299FreshwaterIKLLEDLIPFEKGEIICVGKTYNTYLVNKGLAVWIKVDKEEIKKK
Ga0209704_100014263300027693Freshwater SedimentMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKMDKQDYKKK
Ga0209704_100542323300027693Freshwater SedimentMIKLLIDLLPFQKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKIKTK
Ga0209704_101418823300027693Freshwater SedimentMIKLLIDLAPFQKGEVLSVGKTYDTYLVDKGMAVWVKVDKQDYKKK
Ga0209704_104474423300027693Freshwater SedimentMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGLAVWVKVDKEKFKTK
Ga0209704_112396523300027693Freshwater SedimentMIKLLIDLIPFEKGEIITVGKTYDTYLVNKGMAVWVKVDKQEIKTK
Ga0209246_1000123913300027785Freshwater LakeMIKLLVDLEPFKKDEILSVGKTYDTYLVDKGLAVW
Ga0209353_10005313103300027798Freshwater LakeMIKLLVDLEPFKKDEILSVGKTYDTYLVDKGLAVWIKVDKQDYKKK
Ga0255254_100230313300028105FreshwaterKTFDKINSIFMIKLLEDLIPFEKGEIICVGKTYNTYLVNKGLAVWIKVDKEEIKKK
Ga0307380_1046004623300031539SoilMIKLLVDLAPFEKGEVICVGKTYNTYFVDKGLAVWIKLDKQEFKKK
Ga0315907_10001453443300031758FreshwaterMIKLLVDLVPFEKGEVICVGKTYNTYLVDKGLAVWIKVDKKEFKTK
Ga0315274_1189021523300031999SedimentMIKLLVDLEPFKKDEILSVGKTYDTYLVEKGLAVWIKVDKQDYKKKXA
Ga0315903_1077333733300032116FreshwaterAPFQKGEILTVGKTYDTYLVDKGLAVWIKVDKQDYKKK
Ga0315903_1093786613300032116FreshwaterMIKLLVDLVPFQKGEILSVGKTYDTYLVDKGLAVWIKVDKQEIKKK
Ga0334981_0312067_4_1323300033980FreshwaterLIDLAPFEKGEVLSVGKTYDTYLVEKGMAVWVKVDKEKIKTK
Ga0334982_0246841_613_7533300033981FreshwaterMIKLLIDLAPFQKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKIKTK
Ga0334982_0429810_161_3013300033981FreshwaterMIKLLVDLAPFQKGEVLTVGKTYDTYLVDKGLAVWVKMDKQEIETK
Ga0334994_0056971_963_11033300033993FreshwaterMIKLLVDLAPFHKGEVISVGKTYDTYLVDKGLAVWVKMDKQEIETK
Ga0335003_0106800_1039_11793300033995FreshwaterMIKLLIDLEPFRKGEILTVGKTYDTYLVDKGLAIWIKVDKQEIKTK
Ga0334979_0025358_1989_21293300033996FreshwaterMIKLLVDLAPFQKGEVISVGKTYDTYLVNKGLAIWVKMDKQEIETK
Ga0334979_0483968_3_1313300033996FreshwaterLIDLAPFQKGEILTVGKTYDTYLVDKGLAVWIKVDKQDYKKK
Ga0334998_0266588_305_4453300034019FreshwaterMIKLLVDLAPFMKGEVLSVGKTYDTYLVDKGMAVWVKVDKQDYKKK
Ga0334995_0224498_417_5573300034062FreshwaterMIKLLVDIPPFKEGEVITVGKTYDSYLVRKNLAVWVKVPRQNYRTK
Ga0335031_0324943_272_4123300034104FreshwaterMIKLLIDLAPFQKGEVLSVGKTYDTYLVDKGMAVWVKVDKEKFKTK
Ga0335051_0004055_1317_14573300034109FreshwaterMIKLLVDLAPFHKDEVISVGKTYDTYLVDKGLAVWVKMDKQEIKTK
Ga0335058_0600322_239_3793300034121FreshwaterMIKLLVDLAPFHKGEVISVGKTYDTYLVDKGLAIWVKMDKQEIKTK


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