Scaffold Ga0310813_10002265

Overview

Basic Information

• Taxon OID: 3300031716
• Scaffold ID: Ga0310813_10002265
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11699
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011852	Metagenome / Metatranscriptome	286	Y
F070071	Metagenome / Metatranscriptome	123	N
F080214	Metagenome	115	N
F082926	Metagenome / Metatranscriptome	113	N
F087420	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310813_1000226514	F070071	GAGG	MLTIIGATLVAGTSAGFWYLLPRNGKEHTLVQNNGVGSMVTIVILTLFIVGVAVMCEGLL
Ga0310813_1000226516	F080214	AGGA	MTADAGSRDPVATFGMARKKSRKSILLRFTEALKESRRRQAQRVIATYAHLLADRDTPDDNNHH
Ga0310813_1000226518	F087420	GGAG	MGPKLGACTKRSAAGGAIALALSALSHAPASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0310813_100022658	F082926	GGAGG	MPDISATEHPEQSNIVTWKVISIGTAIVLVVFLFLWL
Ga0310813_100022659	F011852	N/A	MPLFSYFVVMGPTLALALIYICDRIEPHGSPVPTSQIAGIAKPFKPEPERSPYTITGTNFAAAYKPVSARAAAEPKPSRRADSLPQQQPADAGDRNAPRWKAIAQNPIDALMSIH