NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10021034

Scaffold Ga0307488_10021034


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10021034 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5254
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010910Metagenome / Metatranscriptome297Y
F012114Metagenome283Y
F018906Metagenome232Y
F019646Metagenome228Y
F032992Metagenome178Y
F093724Metagenome106Y
F093848Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_100210341F019646AGGAMLNTSKNFEIVYSSDCCGASVHSDADICPTCYEHCEVIEDRTDFDDSEAVHFEAQLDFYGAG
Ga0307488_1002103410F093724GGAGMEYYFDEFATEEIQKKMRHAGNNIPRAKLIGDLDDVKKLENIVRSGAKELLQRLRDEK
Ga0307488_1002103411F093848GAGMNELMQDSLYDVLDRLSTRLVQLYYVNSWELDDQDGMRVAGNILYARNFYNE
Ga0307488_1002103412F032992AGGAMNNTMDPNFRYYDCNNIIDETTGQEQNNLSIMVAVPRIDLSTAESRQENIVAISGIVEEQYRRGVESFTYKEYTGE
Ga0307488_100210343F012114AGGAGMSNNNCVVYPRKNVWVVIDTEGKKIGEVGAMTETEARQKVADHVIIPFTLSHIEE
Ga0307488_100210345F018906AGGAGMKTKVNPLKLNGTRFNTQAHKEQGRYVKHYYFSNGLGASIALHDGTYGGQHGYFELAILKYQHGTDPYTTNEIIYDTTINHDLGCVDVIGWLDFHEVASKLQEIRNYNTGDYNYNVK
Ga0307488_100210348F010910GGAGMLTIYTIFGIMVGFEGYDNGKVYFGVYTPNCEYGYVMTAEEIYLDTIFEKE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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