NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F093848

Metagenome Family F093848

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093848
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 52 residues
Representative Sequence MNEYVENSLYDTLDKLSTRLVQLYYVNSWELDDKDGMRVAGNILYARNFYNE
Number of Associated Samples 75
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 86.79 %
% of genes near scaffold ends (potentially truncated) 15.09 %
% of genes from short scaffolds (< 2000 bps) 67.92 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.491 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(18.868 % of family members)
Environment Ontology (ENVO) Unclassified
(68.868 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(84.906 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.75%    β-sheet: 0.00%    Coil/Unstructured: 46.25%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.75
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.117.1.1: Ras GEFd6v9mb16v9m0.74634
a.157.1.1: Skp1 dimerisation domain-liked1fs1b11fs10.722
c.1.12.3: Phosphoenolpyruvate carboxylased1jqna_1jqn0.70552
a.118.8.2: Transcription factor MalT domain IIId1hz4a_1hz40.6925
f.41.1.0: automated matchesd6z3ta_6z3t0.68111


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF06067DUF932 3.77
PF01844HNH 2.83
PF00436SSB 0.94
PF02732ERCC4 0.94
PF13673Acetyltransf_10 0.94
PF03237Terminase_6N 0.94
PF13537GATase_7 0.94
PF01380SIS 0.94
PF04542Sigma70_r2 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.94
COG0629Single-stranded DNA-binding proteinReplication, recombination and repair [L] 0.94
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.94
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.94
COG1948ERCC4-type crossover junction endonucleaseReplication, recombination and repair [L] 0.94
COG2965Primosomal replication protein NReplication, recombination and repair [L] 0.94
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.49 %
All OrganismsrootAll Organisms41.51 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10000513All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium24234Open in IMG/M
3300000199|SI39nov09_10mDRAFT_c1021900All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300001346|JGI20151J14362_10016219All Organisms → Viruses → Predicted Viral4120Open in IMG/M
3300001346|JGI20151J14362_10208226Not Available530Open in IMG/M
3300001460|JGI24003J15210_10005072Not Available5613Open in IMG/M
3300001589|JGI24005J15628_10016196All Organisms → Viruses → Predicted Viral3309Open in IMG/M
3300001589|JGI24005J15628_10017645All Organisms → Viruses → Predicted Viral3147Open in IMG/M
3300001589|JGI24005J15628_10061122All Organisms → Viruses → Predicted Viral1405Open in IMG/M
3300001589|JGI24005J15628_10086988All Organisms → Viruses → Predicted Viral1083Open in IMG/M
3300001589|JGI24005J15628_10148876Not Available714Open in IMG/M
3300002231|KVRMV2_100259168Not Available557Open in IMG/M
3300003543|FS898DNA_10504306Not Available532Open in IMG/M
3300003620|JGI26273J51734_10042597All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium esteraromaticum1499Open in IMG/M
3300004097|Ga0055584_100634462All Organisms → Viruses → Predicted Viral1116Open in IMG/M
3300004097|Ga0055584_101776982Not Available635Open in IMG/M
3300005837|Ga0078893_12454733Not Available5285Open in IMG/M
3300006484|Ga0070744_10109773Not Available796Open in IMG/M
3300006737|Ga0098037_1094134All Organisms → Viruses → Predicted Viral1042Open in IMG/M
3300006916|Ga0070750_10072200All Organisms → Viruses → Predicted Viral1633Open in IMG/M
3300007637|Ga0102906_1100725Not Available802Open in IMG/M
3300007963|Ga0110931_1052879Not Available1226Open in IMG/M
3300009071|Ga0115566_10138228All Organisms → Viruses → Predicted Viral1531Open in IMG/M
3300009071|Ga0115566_10372374Not Available828Open in IMG/M
3300009433|Ga0115545_1261552Not Available579Open in IMG/M
3300009435|Ga0115546_1052584All Organisms → Viruses → Predicted Viral1566Open in IMG/M
3300009550|Ga0115013_10208511Not Available1173Open in IMG/M
3300009550|Ga0115013_10315001Not Available973Open in IMG/M
3300009703|Ga0114933_10014479Not Available6372Open in IMG/M
3300009703|Ga0114933_10073996Not Available2435Open in IMG/M
3300009703|Ga0114933_10655035All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage675Open in IMG/M
3300009703|Ga0114933_11054530Not Available513Open in IMG/M
3300010153|Ga0098059_1341354Not Available569Open in IMG/M
3300010392|Ga0118731_105162610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium883Open in IMG/M
3300011013|Ga0114934_10416337Not Available598Open in IMG/M
3300012953|Ga0163179_10724841Not Available846Open in IMG/M
3300012954|Ga0163111_12600269Not Available516Open in IMG/M
3300017720|Ga0181383_1002209All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium5523Open in IMG/M
3300017720|Ga0181383_1007879All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2860Open in IMG/M
3300017738|Ga0181428_1094751Not Available697Open in IMG/M
3300017744|Ga0181397_1177027Not Available539Open in IMG/M
3300017750|Ga0181405_1016871All Organisms → Viruses → Predicted Viral2050Open in IMG/M
3300017757|Ga0181420_1128740Not Available765Open in IMG/M
3300017760|Ga0181408_1074924Not Available889Open in IMG/M
3300017776|Ga0181394_1083971All Organisms → Viruses → Predicted Viral1030Open in IMG/M
3300017779|Ga0181395_1214080Not Available596Open in IMG/M
3300017783|Ga0181379_1131401Not Available901Open in IMG/M
3300020294|Ga0211520_1005509All Organisms → Viruses → Predicted Viral2151Open in IMG/M
3300020347|Ga0211504_1054025Not Available952Open in IMG/M
3300020403|Ga0211532_10233520Not Available723Open in IMG/M
3300020428|Ga0211521_10063396Not Available1865Open in IMG/M
3300020428|Ga0211521_10259894Not Available779Open in IMG/M
3300020428|Ga0211521_10513063Not Available513Open in IMG/M
3300020438|Ga0211576_10000034Not Available109556Open in IMG/M
3300020438|Ga0211576_10035849All Organisms → Viruses → Predicted Viral2906Open in IMG/M
3300020438|Ga0211576_10312834Not Available814Open in IMG/M
3300020438|Ga0211576_10325197Not Available795Open in IMG/M
3300020438|Ga0211576_10398295Not Available704Open in IMG/M
3300020439|Ga0211558_10322845Not Available721Open in IMG/M
3300020440|Ga0211518_10049949All Organisms → Viruses → Predicted Viral2402Open in IMG/M
3300020451|Ga0211473_10140777All Organisms → Viruses → Predicted Viral1241Open in IMG/M
3300020451|Ga0211473_10356363Not Available750Open in IMG/M
3300020454|Ga0211548_10004175Not Available6549Open in IMG/M
3300020454|Ga0211548_10072286All Organisms → Viruses → Predicted Viral1630Open in IMG/M
3300020454|Ga0211548_10400551Not Available671Open in IMG/M
3300020469|Ga0211577_10318251Not Available981Open in IMG/M
3300020474|Ga0211547_10234919Not Available937Open in IMG/M
3300021068|Ga0206684_1037883All Organisms → Viruses → Predicted Viral1695Open in IMG/M
3300021347|Ga0213862_10070093All Organisms → Viruses → Predicted Viral1241Open in IMG/M
3300021356|Ga0213858_10019414All Organisms → Viruses → Predicted Viral3241Open in IMG/M
3300021356|Ga0213858_10495942Not Available565Open in IMG/M
3300021364|Ga0213859_10008882Not Available4532Open in IMG/M
3300021365|Ga0206123_10324706Not Available649Open in IMG/M
3300021368|Ga0213860_10087395All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium1356Open in IMG/M
3300021373|Ga0213865_10001257All Organisms → cellular organisms → Bacteria16665Open in IMG/M
3300021375|Ga0213869_10206364Not Available883Open in IMG/M
3300021957|Ga0222717_10000314All Organisms → cellular organisms → Bacteria42412Open in IMG/M
(restricted) 3300022913|Ga0233404_10135384Not Available594Open in IMG/M
(restricted) 3300024059|Ga0255040_10041474Not Available1671Open in IMG/M
(restricted) 3300024062|Ga0255039_10336234Not Available647Open in IMG/M
3300024229|Ga0233402_1005739All Organisms → Viruses → Predicted Viral3097Open in IMG/M
(restricted) 3300024255|Ga0233438_10049610All Organisms → Viruses → Predicted Viral2148Open in IMG/M
(restricted) 3300024299|Ga0233448_1157241Not Available583Open in IMG/M
(restricted) 3300024324|Ga0233443_1090377All Organisms → Viruses → Predicted Viral1194Open in IMG/M
3300024346|Ga0244775_10427712All Organisms → Viruses → Predicted Viral1087Open in IMG/M
3300025071|Ga0207896_1002727All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp.3343Open in IMG/M
3300025120|Ga0209535_1042777Not Available2007Open in IMG/M
3300025120|Ga0209535_1083132All Organisms → Viruses → Predicted Viral1205Open in IMG/M
3300025128|Ga0208919_1059953Not Available1284Open in IMG/M
3300025138|Ga0209634_1003445All Organisms → cellular organisms → Bacteria10672Open in IMG/M
3300025138|Ga0209634_1017329All Organisms → Viruses → Predicted Viral4113Open in IMG/M
3300025138|Ga0209634_1032700All Organisms → Viruses → Predicted Viral2735Open in IMG/M
3300025138|Ga0209634_1123379Not Available1101Open in IMG/M
3300025592|Ga0209658_1109577Not Available629Open in IMG/M
3300025759|Ga0208899_1126416Not Available910Open in IMG/M
3300025816|Ga0209193_1075304Not Available881Open in IMG/M
3300025890|Ga0209631_10046648All Organisms → Viruses → Predicted Viral2875Open in IMG/M
3300026517|Ga0228607_1043453Not Available1155Open in IMG/M
3300027859|Ga0209503_10081158All Organisms → Viruses → Predicted Viral1503Open in IMG/M
3300028196|Ga0257114_1203944Not Available728Open in IMG/M
3300028196|Ga0257114_1235313Not Available659Open in IMG/M
3300028197|Ga0257110_1001410All Organisms → cellular organisms → Bacteria11368Open in IMG/M
3300028197|Ga0257110_1008110All Organisms → Viruses → Predicted Viral4739Open in IMG/M
3300028197|Ga0257110_1012972All Organisms → Viruses → Predicted Viral3734Open in IMG/M
3300028197|Ga0257110_1023245Not Available2757Open in IMG/M
3300031519|Ga0307488_10001777Not Available18100Open in IMG/M
3300031519|Ga0307488_10021034Not Available5254Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine18.87%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine18.87%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater11.32%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater8.49%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine4.72%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine4.72%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface4.72%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine3.77%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.77%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.83%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.89%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.89%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.89%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.89%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.94%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.94%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.94%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.94%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.94%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.94%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.94%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.94%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.94%
Diffuse Hydrothermal Flow Volcanic VentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent0.94%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000199Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 10mEnvironmentalOpen in IMG/M
3300001346Pelagic Microbial community sample from North Sea - COGITO 998_met_01EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300003543Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS898_N3Area_DNAEnvironmentalOpen in IMG/M
3300003620Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007637Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02EnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009550Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 MetagenomeEnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300020294Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020428Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300020440Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)EnvironmentalOpen in IMG/M
3300020451Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)EnvironmentalOpen in IMG/M
3300020454Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300020474Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)EnvironmentalOpen in IMG/M
3300021068Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022913 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024229Seawater microbial communities from Monterey Bay, California, United States - 54DEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024299 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_150_MGEnvironmentalOpen in IMG/M
3300024324 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025592Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300026517Seawater microbial communities from Monterey Bay, California, United States - 8DEnvironmentalOpen in IMG/M
3300027859Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_10000513273300000117MarineMNEYVEDSLYDVLDRLSTKLVQLYYLNSWELDDKDGMRVSGNILYARNFYNE*
SI39nov09_10mDRAFT_102190033300000199MarineMNELMQDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVAGNILYVRNLKNE*
JGI20151J14362_10016219113300001346Pelagic MarineMNELIEENLYVTLDKLPTRLVQLYYVNSWELDDKDGMRISGNILYIRNLKNE*
JGI20151J14362_1020822613300001346Pelagic MarineMNELIEENLYDTLDKLPTKLVQLYYIACWETDDKDGMRVSGNILYARNYYNE*
JGI24003J15210_10005072153300001460MarineMNEYVEDSLYDILDRLSTKLVQLYYVNSWELDDQDGMRVAGNILYARNFYNADV*
JGI24005J15628_1001619653300001589MarineMNELMEDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVAGNILYARNFYNADV*
JGI24005J15628_10017645103300001589MarineMNELMQDSLYDTLDKLSTRLVQLYYVTCWELDDQDGM
JGI24005J15628_1006112233300001589MarineMNECMEDSLYDTLDKLSTKLVQLYYVNSWELDDQDGMRVSANILYTRNFYNE*
JGI24005J15628_1008698843300001589MarineMNELMEDSLYDTLDKLPTRLVQLYYVNSWELDDQDGMRVAGNILYTRNFYNE*
JGI24005J15628_1014887633300001589MarineMNQLMEENLYVTLDKLPTRLVQLYYVNSWELDDQDGMRISGNILYIRNLKNE*
KVRMV2_10025916813300002231Marine SedimentDILDKLSTRLVQLYYVSCWETDDKDGMRVSGNILYARNFYNE*
FS898DNA_1050430623300003543Diffuse Hydrothermal Flow Volcanic VentMNELMQDSLYDTLDKLSTRLVQLYYVTCWELDDQDGMRVSGNILYARNYYNADV*
JGI26273J51734_1004259733300003620MarineMNEYVEKSLYDVLDKLPTRLVQLYYVNSWELDDQDGVRVSGNILYARNYYETA*
Ga0055584_10063446233300004097Pelagic MarineMNELIEENLYDTLDKLPTKLVQLYYVACWETDDKDGMRVSGNILYARNYYNE*
Ga0055584_10177698223300004097Pelagic MarineMNEYVETSLYDTLDKLSTTLVQQYYVVCWETDDKDGMRVADNILHARNFYETA*
Ga0078893_12454733153300005837Marine Surface WaterMNELEEKNLYDVLDKYSTRLVQLYYVHSWETGDEDGMRISGNILYARNYFDE*
Ga0070744_1010977333300006484EstuarineMNELMEDSLYDTLDKLPTRLVQLYYVNSWELDDKDGMRVAGNILYTRNFYNE*
Ga0098037_109413423300006737MarineMNELREQNLYDILDKLSTRLVQLYYVSCWETNDTDGMRVSSNILYVRNFYETA*
Ga0070750_1007220033300006916AqueousMNEYVEDNLYDILDRLSTKLVQLYYLNSCELDDKDGMRVSGNILYARNFYNE*
Ga0102906_110072533300007637EstuarineFNDTGMKMNELMQDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVAGNILYTRNFYNE*
Ga0110931_105287933300007963MarineMNEYVKKSLYDILDKLSTRLVQLYYVSCWETDDTDGMRVAGNILYARNFYNE*
Ga0115566_1013822823300009071Pelagic MarineMLTMNELIEENLYVTLDKLPTRLVQLYYVNSWELDDKDGMRISGNILYIRNLKNE*
Ga0115566_1037237433300009071Pelagic MarineMNEYVENSLYDVLDKLSTKLVQLYYLNSWELDDKDGMRVSENILYMRNLKNE*
Ga0115545_126155233300009433Pelagic MarineMNEYVEDNLYDILDRLSTKLVQLYYLNSWELDDKDGMRVSGNILYARNFYNE*
Ga0115546_105258463300009435Pelagic MarineMNEYVEDNLYDILDRLSTKLVQLYYLNSWELDDKDGMRVSGNILYATNFYNE*
Ga0115013_1020851143300009550MarineMNEYREKNLYDILDKLSTRLVQLYYVSCWETDDKDGMRVSGNVLYARNFYNE*
Ga0115013_1031500113300009550MarineLYDILDKLSTRLVQLYYVSCWETDDTDGMRVSGNILYARNFYNE*
Ga0114933_1001447923300009703Deep SubsurfaceMNELKEQSLYDILDKLSTRLVQLYYVNSWELNDKDGMRVAGNILYARNFYNE*
Ga0114933_1007399653300009703Deep SubsurfaceMNELREQNLYDILDKLSTRLVQLYYVSCWETDDKDGMRVSGNILYTRNFFNE*
Ga0114933_1065503523300009703Deep SubsurfaceMNELIEENLYVTLDKLPTRLVQLYYVNSWELDDQDGMRVAGNILYVRNLKNE*
Ga0114933_1105453023300009703Deep SubsurfaceMNQHKEKSLYDILDKLSTRLVQLYYVSCWETDDKDGMRVSGNILYARNFYNE*
Ga0098059_134135423300010153MarineMNEYVEDSLYDVLDRLSTKLVQLYYLNSWELDDRDGMRVSGNILYARNFYNE*
Ga0118731_10516261023300010392MarineMNEHVKKSLYDVLDKYSTRLVQLYYVNSWQLGDLEGMNVAGNILYKRNFYNE*
Ga0114934_1041633723300011013Deep SubsurfaceLGLNMNEYVETSLYDTLDKLSTTLVQQYYVVCWETDDKDGMRVADNILHARNFYETA*
Ga0163179_1072484123300012953SeawaterMNEYKERSLYEILDKMSTNLVQLYYVSCWETDDKDGMRVSGNILYARNFYNE*
Ga0163111_1260026923300012954Surface SeawaterMNEHREQSLYDILDKFSTRLVHLYYLACWETDDTDGMRISKNILHARNFYNE*
Ga0181383_100220973300017720SeawaterMNEYVEDSLYDILDRLSTKLVQLYYLNSWELDDQDGMRVSGNILYARNFYNE
Ga0181383_100787963300017720SeawaterMNELIEENLYVTLDKLTTRLVQLYYVNSWELDDKDGMRVAGNILYMRNLKNE
Ga0181428_109475123300017738SeawaterMNELMQDSLYDTLDKLSTRLVQLYYVNSWELDDKDGMRVAGNILYARNFYNE
Ga0181397_117702723300017744SeawaterMKMNEYVEDSLYDILDRLSTKLVQLYYLNSWELDDQDGMRVSGNILYARNFYNE
Ga0181405_101687123300017750SeawaterMNELIEENLYVTLDKLPTRLVQLYYLNSWELDDQDGMRVSGNILYARNFYNE
Ga0181420_112874033300017757SeawaterMNELMQDSLYDVLDRLSTKLVQLYYVNSWELNDQDGMRVAGNILYARNYYNADV
Ga0181408_107492443300017760SeawaterMNEYVEDSLYDILDRLSTKLVQLYYVNSWELDDQDGMRVAG
Ga0181394_108397123300017776SeawaterMNEYVEDSLYDILDRLSTKLVQLYYLNSWELDDQDGMRVAGNILYARNYYNADV
Ga0181395_121408013300017779SeawaterKIETMKKENMLTMNKLIEKNLYDILDKLSTRLVQMYYVSCWETDDKDGMRVADNILHCRNFYNE
Ga0181379_113140123300017783SeawaterMKMNEYVEDSLYDILDRLSTKLVQLYYLNSWELDDQDGMRVAGNILYARNYYNADV
Ga0211520_100550923300020294MarineMNELIEENLYVTLDKLPTRLVQLYYVNSWELDDKDGMRISGNILYIRNLKNE
Ga0211504_105402533300020347MarineMLTMNELIEENLYVTLDKLPTRLVQLYYVNSWELDDQDGMRISGNILYIRNLKNE
Ga0211532_1023352033300020403MarineMNEHREQSLYDILDKFSTRLVHLYYLACWETDDTDGMRISKNILHARNFYNE
Ga0211521_1006339623300020428MarineMNEHVEDSLYDILDRLSTKLVQLYYLNSWELDDQDGMRVSGNILYARNFYNE
Ga0211521_1025989413300020428MarineMNELKEQNLYDILDKLSTRLVQLYYVNSWELDDQDGMRVAGNILYARNFYNE
Ga0211521_1051306323300020428MarineMNEYVEDSLYDILDRLSTKLVQLYYLNSWELDDKDGMRVSGNILYARNFYNE
Ga0211576_100000341153300020438MarineMTQESMLTMNELIEKNLYDILDKLSTRLVQMYYVSCWETDDKDGMRVADNILHCRNFYNE
Ga0211576_1003584953300020438MarineMNEYVEDSLYDILDRLSTKLVQLYYVNSWELDDQDGMRVAGNILYARNFYNADV
Ga0211576_1031283443300020438MarineMKMNEYVEDSLYDVLDKLSTRLVQLYYVNSWELDDKDGMRVSGNILYARNFYNE
Ga0211576_1032519743300020438MarineMNELMQDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVAGNILYVRNLKNE
Ga0211576_1039829523300020438MarineMNEYVENSLYDTLDKLSTRLVQLYYVNSWELDDKDGMRVAGNILYARNFYNE
Ga0211558_1032284523300020439MarineMNEHREQSLYDILDKFSTRLVHLYYLACWETDDQDGMRISKNILYARNFYNE
Ga0211518_1004994973300020440MarineMNELKEQNLYDILDKLSTRLVQLYYVSCWETDDKDGMRVSGNILYARNFYNE
Ga0211473_1014077713300020451MarineNELKEQSLYDILDKLSTRLVQLYYVNSWELDDKDGMRVAGNILYARNFYNE
Ga0211473_1035636323300020451MarineNELKEQSLYDILDKLSTRLVQLYYVNSWELDDKDGMRVSGNILYMRNLKNE
Ga0211548_1000417563300020454MarineMNELREQNLYDILDKLSTRLVQLYYVSCWETDDKDGMRVSGNILYTRNFFNE
Ga0211548_1007228653300020454MarineMNQHKEKSLYDILDKLSTRLVQLYYVSCWETDDKDGMRVSGNILYARNFYNE
Ga0211548_1040055133300020454MarineMNEYVEDSLYDVLDRLSTKLVQLYYLNSWELDDKDGMRVAENILYARNYYNADV
Ga0211577_1031825123300020469MarineMNEYVEDSLYDILDRLSTKLVQLYYVNSWELDDQDGMRVAGNILYTRNFYNE
Ga0211547_1023491933300020474MarineMNEHREQNLYDILDKLSTRLVQLYYVSCWETDDKDGMRVSGNILYARNFYNE
Ga0206684_103788333300021068SeawaterMNEYVEKSLYDILDKYSTRLVQLYYVNSWQLGDLEGMNVAGNILYKRNYYNE
Ga0213862_1007009333300021347SeawaterMNELKEQNLYDILDKLSTRLIQLYYVSCWETDDKDGMRVSGNILYARNFYNE
Ga0213858_1001941463300021356SeawaterMNEYREKSLYDILDKLSTRLVQLYYVSCLETDDTDGMRISGNILYARNFYNE
Ga0213858_1049594213300021356SeawaterMNELKEQNLYDILDNLSTKLVQLYYVSCCETNDKDGMRISGNVLYARNFYNE
Ga0213859_1000888243300021364SeawaterMLTMNEHREQSLYDILDKLSTRLVQLYYVACWETDDQDGMRISGNILYARNFYNE
Ga0206123_1032470623300021365SeawaterMNEYVEDNLYDILDRLSTKLVQLYYLNSWELDDKDGMRVSGNILYARNFYNE
Ga0213860_1008739553300021368SeawaterMYEREEENLYDKLDKWSTRLVQLYYVNSWETGDEEGMRVSGNILYARNYFNE
Ga0213865_10001257273300021373SeawaterMNEHREQSLYDILDKLSTRLVQLYYVACWETDDQDGMRISGNILYARNFYNE
Ga0213869_1020636443300021375SeawaterMNEYVEDSLYDVLDRLSTKLVQLYYVNSWELDDQDGMRVAGNILYARNYYNADV
Ga0222717_10000314403300021957Estuarine WaterMNELMQDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVAGNILYVRNLRNE
(restricted) Ga0233404_1013538413300022913SeawaterMNEYVEKSLYDVLDKLPTRLVQLYYVNSWELDDQDGVRVSGN
(restricted) Ga0255040_1004147423300024059SeawaterMNEYVEKSLYDVLDKLPTRLVQLYYVNSWELDDQDGVRVSGNILYARNYYETA
(restricted) Ga0255039_1033623423300024062SeawaterMNEYVEKSLYDVLDKLPTRLVQLYYVNSWELDDQDGVRV
Ga0233402_100573973300024229SeawaterMNEYREKSLYDILDKLSTRLVQLYYVSCWETDDTDGMRVSGNILHARNFYNE
(restricted) Ga0233438_1004961053300024255SeawaterMNELMEENLYVTLDKLPTRLVQLYYVNSWELDDKDGMRISGNILYMRNLKNE
(restricted) Ga0233448_115724133300024299SeawaterMNEYVEKSLYDVLDKLPTRLVQLYYVNSWELDDQDGVRVSGNI
(restricted) Ga0233443_109037753300024324SeawaterMNEYVEKSLYDILDKYSTRLVQLYYVNSWQLGDLEGMNVAGNILYKRNY
Ga0244775_1042771223300024346EstuarineMNELMEDSLYDTLDKLPTRLVQLYYVNSWELDDKDGMRVAGNILYTRNFYNE
Ga0207896_100272723300025071MarineMNEIMEDSLYDVLDKLPTKLVQLYYVNSWELDDQDGVRVSGNILYARNYYETA
Ga0209535_104277743300025120MarineMNELMQDSLYDVLDRLSTKLVQLYYVNSWELDDQDGMRVSGNILYMRNLKNE
Ga0209535_108313223300025120MarineMNELMQDSLYDTLDKLSTRLVQLYYVTCWELDDQDGMRVSGNILYARNYYNADV
Ga0208919_105995343300025128MarineMNEYVKKSLYDILDKLSTRLVQLYYVSCWETDDTDGMRVAGNILYARNFYNE
Ga0209634_100344573300025138MarineMNELMEDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVAGNILYARNFYNADV
Ga0209634_101732993300025138MarineMNELMEDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVAGNILYTRNFYNE
Ga0209634_103270073300025138MarineMNQLMEENLYVTLDKLPTRLVQLYYVNSWELDDQDGMRISGNILYIRNLKNE
Ga0209634_112337953300025138MarineMNECMEDSLYDTLDKLSTKLVQLYYVNSWELDDQDGMRVSANILYTRNFYNE
Ga0209658_110957713300025592MarineMNEYVEKSLYDVLDKLPTRLVQLYYVNSWELDDQDGVRVSGNILYAR
Ga0208899_112641633300025759AqueousMNEYVEDNLYDILDRLSTKLVQLYYLNSCELDDKDGMRVSGNILYARNFYNE
Ga0209193_107530433300025816Pelagic MarineMNELIEENLYDTLDKLPTKLVQLYYIACWETDDKDGMRVSGNILYARNYYNE
Ga0209631_1004664863300025890Pelagic MarineMNELIEENLYDTLDKLPTKLVQLYYVACWETDDKDGMRVSGNILYARNYYNE
Ga0228607_104345323300026517SeawaterMNEYVEKSLYDVLDKLPTRLVQLYYVNSCESDDQDGVRVSGNILYARNYYETA
Ga0209503_1008115843300027859MarineMNEYREKNLYDILDKLSTRLVQLYYVSCWETDDKDGMRVSGNVLYARNFYNE
Ga0257114_120394423300028196MarineMNELIEENLYVTLDKLTTRLVQLYYVNSWELDDKDGMRISGNILYMRNLKNE
Ga0257114_123531323300028196MarineMNEYVENSLYDTLDKLSTRLVQLYYVNSWELDDKDGMRVAGNILYARSFYNE
Ga0257110_100141063300028197MarineMNELMEDSLYDTLDKLPTRLVQLYYVNSWELDDQDGMRVAGNILYTRNFYNE
Ga0257110_100811053300028197MarineMNEYVEDSLYDVLDRLSTKLVQLYYVNSWELDDKDGMRVSGNILYARNFYNE
Ga0257110_101297223300028197MarineMNELMQDSLYDVLDKLSTRLVQLYYVNSWELDDKDGMRISGNILYIRNLKNE
Ga0257110_102324553300028197MarineMNELMQDSLYDTLDKLPTKLVQLYYVNSWELDDQDGMRVSANILYTRNFYNE
Ga0307488_10001777263300031519Sackhole BrineMNEYVEDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVSGNILYARNYYERA
Ga0307488_10021034113300031519Sackhole BrineMNELMQDSLYDVLDRLSTRLVQLYYVNSWELDDQDGMRVAGNILYARNFYNE


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