Metagenome Family F093724

Overview

Basic Information

• Family ID: F093724
• Family Type: Metagenome
• Number of Sequences: 106
• Average Sequence Length: 58 residues
• Representative Sequence: MDMPYYFDEFATEDIQMWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYRDEK
• Number of Associated Samples: 69
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 86.79 %
• % of genes near scaffold ends (potentially truncated): 9.43 %
• % of genes from short scaffolds (< 2000 bps): 74.53 %
• Associated GOLD sequencing projects: 62
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (65.094 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (38.679 % of family members)
• Environment Ontology (ENVO): Unclassified (76.415 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (88.679 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 47.67%
  β-sheet: 0.00%
  Coil/Unstructured: 52.33%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF06067	DUF932	3.77
PF01844	HNH	1.89
PF01541	GIY-YIG	0.94
PF02732	ERCC4	0.94
PF07635	PSCyt1	0.94
PF01370	Epimerase	0.94
PF13540	RCC1_2	0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1948	ERCC4-type crossover junction endonuclease	Replication, recombination and repair [L]	0.94

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
All Organisms	root	All Organisms	34.91 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
Viruses	superkingdom	All Organisms → Viruses	26.42 %
cellular organisms	root	All Organisms → cellular organisms	8.49 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.49 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.89 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.53 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.83 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.89 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.53 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.83 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.89 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.53 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.83 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.89 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.53 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.89 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.89 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.53 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.89 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.89 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.53 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	1.89 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.89 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.53 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1.89 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.89 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001460|JGI24003J15210_10005072	Not Available	5613
3300001589|JGI24005J15628_10016196	All Organisms → Viruses → Predicted Viral	3309
3300002231|KVRMV2_100259779	Not Available	544
3300002488|JGI25128J35275_1013867	All Organisms → Viruses → Predicted Viral	2061
3300004097|Ga0055584_101385584	All Organisms → cellular organisms → Bacteria	731
3300004097|Ga0055584_101441335	Not Available	715
3300006735|Ga0098038_1077864	Not Available	1165
3300006735|Ga0098038_1137129	Not Available	822
3300006737|Ga0098037_1094134	All Organisms → Viruses → Predicted Viral	1042
3300006919|Ga0070746_10521287	Not Available	519
3300007113|Ga0101666_1062359	Not Available	690
3300007963|Ga0110931_1052879	Not Available	1226
3300009052|Ga0102886_1145089	Not Available	709
3300009071|Ga0115566_10372374	Not Available	828
3300009433|Ga0115545_1192732	Not Available	697
3300009433|Ga0115545_1261552	Not Available	579
3300009481|Ga0114932_10253010	All Organisms → Viruses → Predicted Viral	1062
3300009550|Ga0115013_10254911	All Organisms → Viruses → Predicted Viral	1070
3300009550|Ga0115013_10446637	Not Available	834
3300009703|Ga0114933_10029478	All Organisms → Viruses → Predicted Viral	4170
3300009703|Ga0114933_10189505	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1398
3300009703|Ga0114933_10363104	Not Available	953
3300009703|Ga0114933_10436429	Not Available	855
3300010148|Ga0098043_1206942	Not Available	542
3300012920|Ga0160423_10529933	Not Available	800
3300012920|Ga0160423_10580526	Not Available	760
3300012920|Ga0160423_10863744	Not Available	608
3300012928|Ga0163110_10832243	Not Available	727
3300012928|Ga0163110_11291102	Not Available	588
3300012936|Ga0163109_10125749	All Organisms → Viruses → Predicted Viral	1881
3300012954|Ga0163111_12600269	Not Available	516
3300017720|Ga0181383_1006977	All Organisms → Viruses → Predicted Viral	3050
3300017728|Ga0181419_1128386	Not Available	615
3300017732|Ga0181415_1092965	Not Available	680
3300017740|Ga0181418_1133756	Not Available	598
3300017744|Ga0181397_1175384	Not Available	542
3300017744|Ga0181397_1177027	Not Available	539
3300017757|Ga0181420_1189866	Not Available	600
3300017759|Ga0181414_1080155	Not Available	864
3300017767|Ga0181406_1233808	Not Available	541
3300017776|Ga0181394_1083971	All Organisms → Viruses → Predicted Viral	1030
3300020247|Ga0211654_1036509	Not Available	763
3300020258|Ga0211529_1038249	Not Available	821
3300020347|Ga0211504_1004859	All Organisms → Viruses → Predicted Viral	4727
3300020381|Ga0211476_10066076	All Organisms → Viruses → Predicted Viral	1420
3300020394|Ga0211497_10016612	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3821
3300020394|Ga0211497_10057518	Not Available	1668
3300020403|Ga0211532_10233520	Not Available	723
3300020403|Ga0211532_10358313	Not Available	553
3300020408|Ga0211651_10405824	Not Available	500
3300020410|Ga0211699_10265878	Not Available	664
3300020417|Ga0211528_10258522	Not Available	657
3300020421|Ga0211653_10074243	All Organisms → Viruses → Predicted Viral	1522
3300020428|Ga0211521_10063396	Not Available	1865
3300020428|Ga0211521_10429513	Not Available	575
3300020428|Ga0211521_10513063	Not Available	513
3300020438|Ga0211576_10001282	All Organisms → cellular organisms → Bacteria	19295
3300020438|Ga0211576_10035849	All Organisms → Viruses → Predicted Viral	2906
3300020438|Ga0211576_10312834	Not Available	814
3300020438|Ga0211576_10325197	Not Available	795
3300020438|Ga0211576_10398295	Not Available	704
3300020439|Ga0211558_10006357	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6255
3300020440|Ga0211518_10220957	Not Available	923
3300020442|Ga0211559_10007419	Not Available	5807
3300020442|Ga0211559_10020252	All Organisms → Viruses → Predicted Viral	3361
3300020442|Ga0211559_10032709	Not Available	2597
3300020442|Ga0211559_10127939	Not Available	1216
3300020442|Ga0211559_10193493	Not Available	961
3300020450|Ga0211641_10186745	All Organisms → Viruses → Predicted Viral	1036
3300020451|Ga0211473_10000082	Not Available	52799
3300020451|Ga0211473_10059696	Not Available	1920
3300020451|Ga0211473_10279768	Not Available	857
3300020451|Ga0211473_10382622	Not Available	720
3300020454|Ga0211548_10072286	All Organisms → Viruses → Predicted Viral	1630
3300020454|Ga0211548_10113024	All Organisms → Viruses → Predicted Viral	1301
3300020462|Ga0211546_10545196	Not Available	585
3300020470|Ga0211543_10315342	Not Available	758
3300020474|Ga0211547_10000328	Not Available	29540
3300021335|Ga0213867_1000517	All Organisms → cellular organisms → Bacteria	17338
3300021364|Ga0213859_10000958	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	13089
3300021364|Ga0213859_10091244	All Organisms → Viruses → Predicted Viral	1445
3300021365|Ga0206123_10324706	Not Available	649
3300021368|Ga0213860_10028674	All Organisms → Viruses → Predicted Viral	2334
(restricted) 3300024264|Ga0233444_10007747	All Organisms → cellular organisms → Bacteria	9233
(restricted) 3300024264|Ga0233444_10072640	Not Available	1916
3300024348|Ga0244776_10914148	Not Available	519
3300025128|Ga0208919_1059953	Not Available	1284
3300025132|Ga0209232_1004298	All Organisms → cellular organisms → Bacteria	6533
3300025132|Ga0209232_1013981	All Organisms → Viruses → Predicted Viral	3243
3300025132|Ga0209232_1064383	Not Available	1304
3300025138|Ga0209634_1003445	All Organisms → cellular organisms → Bacteria	10672
3300025138|Ga0209634_1113459	Not Available	1171
3300025151|Ga0209645_1193268	Not Available	605
3300025769|Ga0208767_1276817	Not Available	507
3300025890|Ga0209631_10539267	Not Available	510
3300027859|Ga0209503_10214515	Not Available	926
3300028197|Ga0257110_1023245	Not Available	2757
3300028197|Ga0257110_1091920	All Organisms → Viruses → Predicted Viral	1279
3300029319|Ga0183748_1045004	All Organisms → Viruses → Predicted Viral	1295
3300029448|Ga0183755_1004457	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6718
3300029448|Ga0183755_1023006	All Organisms → Viruses → Predicted Viral	2004
3300029448|Ga0183755_1034006	All Organisms → Viruses → Predicted Viral	1460
3300031519|Ga0307488_10001777	Not Available	18100
3300031519|Ga0307488_10021034	Not Available	5254
3300032073|Ga0315315_10282010	All Organisms → Viruses → Predicted Viral	1548
3300032073|Ga0315315_10535136	All Organisms → Viruses → Predicted Viral	1084

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	38.68%
Oceanic	Environmental → Aquatic → Marine → Oceanic	25.47%
Strait	Environmental → Aquatic → Marine → Strait	9.43%
Coastal	Environmental → Aquatic → Marine → Coastal	7.55%
Volcanic	Environmental → Aquatic → Marine → Volcanic	5.66%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.77%
Pelagic	Environmental → Aquatic → Marine → Pelagic	3.77%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.83%
Inlet	Environmental → Aquatic → Marine → Inlet	1.89%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.94%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	38.68%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	18.87%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	9.43%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.55%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	6.60%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.89%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.89%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	0.94%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	38.68%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	16.98%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	9.43%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	6.60%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	4.72%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.77%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.83%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.83%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.89%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.89%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.89%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.89%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.89%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.89%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.94%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.94%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	0.94%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental
3300002231	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat	Environmental
3300002488	Marine viral communities from the Pacific Ocean - ETNP_2_60	Environmental
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental
3300007113	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is	Environmental
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental
3300009052	Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02	Environmental
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental
3300017720	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23	Environmental
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental
3300020247	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)	Environmental
3300020258	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)	Environmental
3300020347	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)	Environmental
3300020381	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620)	Environmental
3300020394	Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)	Environmental
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental
3300020408	Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)	Environmental
3300020410	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)	Environmental
3300020417	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)	Environmental
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental
3300020428	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)	Environmental
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental
3300020439	Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)	Environmental
3300020440	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)	Environmental
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental
3300020450	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)	Environmental
3300020451	Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)	Environmental
3300020454	Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)	Environmental
3300020462	Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)	Environmental
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental
3300020474	Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)	Environmental
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental
3300021368	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550	Environmental
3300024264 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG	Environmental
3300024348	0.2um to 3um size fraction coassembly	Environmental
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental
3300025890	Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)	Environmental
3300027859	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)	Environmental
3300028197	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m	Environmental
3300029319	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516	Environmental
3300029448	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082	Environmental
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24003J15210_1000507214	3300001460	Marine	MKYYFDEFATEDIQMWVRECGRDIPQAKLRGDLDDVRTLENVVRSGAKELLQRLRDENE*
JGI24005J15628_100161964	3300001589	Marine	MKYYFDEFATEDIQMWVRECGRDIPQAKLRGDLDDVRTLENVVRSGAKELLQRYRDEK*
KVRMV2_1002597793	3300002231	Marine Sediment	MKYYFDEFETEDIQDWXRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYREXK*
JGI25128J35275_10138678	3300002488	Marine	MGMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGEDVEAWESIVRSGAKELLKRYRDEK*
Ga0055584_1013855842	3300004097	Pelagic Marine	MSMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYRDEK*
Ga0055584_1014413353	3300004097	Pelagic Marine	MDIPYYFDEFATEDIQMWVRWAGDEIPKAKLRGDLDDVTDWENIVRSGAKELLKRYRDEK
Ga0098038_10778644	3300006735	Marine	MTMPYYFDEFETEDIQDWVRWAGNEIPKAKLRGDDVTDWENIVRSGSKELLQRYREENE*
Ga0098038_11371293	3300006735	Marine	MQYYFDEFPTEDIQTWVRWAGNEIPKAKLRGDDVTDWENIVQSGSKELLRRYREENE*
Ga0098037_10941343	3300006737	Marine	MTMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWEDIVKSGAKELKKRYSEEN*
Ga0070746_105212871	3300006919	Aqueous	MKYYFDEFSTEDIQDWVRWAGEEIPKAKMRGEDSEAWENIVRSGATELLRRWRDGE*
Ga0101666_10623594	3300007113	Volcanic Co2 Seep Seawater	MNMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLRRYKDDE*
Ga0110931_10528792	3300007963	Marine	MNMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWEDIVRSGAKELLRRYKDDE*
Ga0102886_11450893	3300009052	Estuarine	MKYYFDEFATEDIQMWVRECGKAIPQAKLIGDLDEVQTLENIVKSGAKELLQRYKDE*
Ga0115566_103723742	3300009071	Pelagic Marine	MDMPYYFDEFATEDIQMWVRECGKDMPKAKLRGDLTELEILENVVRSGSKELLRRYREENE*
Ga0115545_11927322	3300009433	Pelagic Marine	MDMPYYFDEFETEDIQNWVRWAGNEIPKAKMRGDDVTDWENIVRSGSKELLRRYREENE*
Ga0115545_12615522	3300009433	Pelagic Marine	MDMPYYFDEFATEDIQMWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYRDEK*
Ga0114932_102530103	3300009481	Deep Subsurface	MDMPYYFDEFATEDIQMWVRECGKDMPKAKLRGDLTELEILENVVRSGSKELLKRYREENE*
Ga0115013_102549113	3300009550	Marine	MDMPYYFDEFATEDIQMWVRECGKDIPRAKLRGDLTEVEILENVVRSGSKELLKRYREENE*
Ga0115013_104466371	3300009550	Marine	MTMLYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGATELLQRYREENE*
Ga0114933_100294784	3300009703	Deep Subsurface	MDMPYYFDEFSTEDIQMWVRECGKDMPRARLRGDLTELEILENVVRSGSKELLKRYREENE*
Ga0114933_101895052	3300009703	Deep Subsurface	MNMPYYFDEFATEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLRRYKDDE*
Ga0114933_103631043	3300009703	Deep Subsurface	MNMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWESIVRSGSKELLKRYREENE*
Ga0114933_104364291	3300009703	Deep Subsurface	TEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGATELLQRYRDEK*
Ga0098043_12069422	3300010148	Marine	MSMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDTEAWESIVRSGAKELLQRYREENE*
Ga0160423_105299333	3300012920	Surface Seawater	MTMQYYFDEFPTEDIQTWVRWAGNEIPKAKLRGDDVTDWENIVRSGSKELLRRYREENE*
Ga0160423_105805261	3300012920	Surface Seawater	MDMPYYFDEFATEDIQDWVRWAGDEIPKAKLRGEDVEAWESIVRSGAKELLKRYRDENE*
Ga0160423_108637441	3300012920	Surface Seawater	MQYYFDEFETEDIQDWVRWAGEEIPKAKMRGEDVEAWENIVRSGAKELLQRYRDEK*
Ga0163110_108322433	3300012928	Surface Seawater	YFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVQSGAKELLKRYRDEK*
Ga0163110_112911022	3300012928	Surface Seawater	MDMPYYFDEFATEDIQMWVREAGKEIPQAKLRGDLDDVKSWENIVRSGSKELLRRWRDEK
Ga0163109_101257495	3300012936	Surface Seawater	MDMPYYFDEFATEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYRDEK*
Ga0163111_126002691	3300012954	Surface Seawater	MDMPYYFEEFATEDIQMWVRECGKDIPKAKLRGDLDDVKTLENIVRSGSKELLRRWRDGE
Ga0181383_10069777	3300017720	Seawater	MDMPYYFDEFQTEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLKRYREEN
Ga0181419_11283863	3300017728	Seawater	MDMPYYFDEFPTEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLRRYREEN
Ga0181415_10929653	3300017732	Seawater	GMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGEDVEAWESIVRSGAKELLKRYRDEK
Ga0181418_11337563	3300017740	Seawater	MNMPYYFDEFATEDIQMWVRECGKDMPKAKLRGDLTELEILENVVRSGSKELLRRYREEN
Ga0181397_11753841	3300017744	Seawater	MDMPYYFDEFPTEDIQMWVRECGKDMPKAKLRGDLTELEILENVVRSGSKELLRRYREEN
Ga0181397_11770273	3300017744	Seawater	MNMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWEDIVRSGAKELLQRLRDENE
Ga0181420_11898663	3300017757	Seawater	MDMPYYFDEFPTEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLRLYR
Ga0181414_10801553	3300017759	Seawater	MDMPYYFDEFEIEDIQDWVRWAGDEIPKAKLRGEDVEAWESIVRSGAKELLKRYRDEK
Ga0181406_12338081	3300017767	Seawater	MDMPYYFDEFATEDIQMWVRECGKDMPKAKLRGDLTELEILENVVRSGSKELLKRYRDEK
Ga0181394_10839713	3300017776	Seawater	MNYYFDEFETKDIQDWVRWAGNEIPQAKLRGDLDDVRTLENVVRSGAKELLQRLRDENE
Ga0211654_10365093	3300020247	Marine	MQYYFDEFPTEDIQTWVRWAGNEIPKAKLRGDDVTDWENIVRSGSKELLRRYREENE
Ga0211529_10382493	3300020258	Marine	MDMPYYFDEFATEDIQMWVREAGKEIPRAKLRGDLDDVKNWENIVRSGSKELLRRWRDGE
Ga0211504_10048599	3300020347	Marine	MDMPYYFDEFATEDIQMWVRECGKDMPKAKLRGDLTELEILENVVRSGSKELLQRYREEN
Ga0211476_100660764	3300020381	Marine	MKYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGATELLQRYRDEK
Ga0211497_100166124	3300020394	Marine	MNMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVKSGAKELLRRYKDDE
Ga0211497_100575185	3300020394	Marine	MDMPYYFDEFPTEDIQTWVRWAGDEIPKAKLRGDDVTDWENIVRSGSKELLKRYREENE
Ga0211532_102335202	3300020403	Marine	MDMPYYFDEFATEDIQMWVRECGKDIPKARLRGDLDDVKTLENIVRSGAKELLRRWRDGE
Ga0211532_103583131	3300020403	Marine	MSMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLKRYRDEK
Ga0211651_104058242	3300020408	Marine	MTMQYYFDEFPTEDIQTWVRWAGNEIPKAKLRGDDVTDWENIVRSGSKELLRRYREENE
Ga0211699_102658781	3300020410	Marine	MNMPYYFDEFETEDIQDWIRWAGEEIPKAKMRGEDVEAWENIVKSGAKELLKRYRDEK
Ga0211528_102585222	3300020417	Marine	MDMPYYFDEFATEDIQMWVRECGKDIPKAKLRGDLDDVKTLENIVRSGAKELLRRWRDGE
Ga0211653_100742434	3300020421	Marine	MKYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDAEAWENIVRSGAKELLQRYRDENE
Ga0211521_100633961	3300020428	Marine	YFDEFATEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLRRYREENE
Ga0211521_104295132	3300020428	Marine	MKYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYREEK
Ga0211521_105130633	3300020428	Marine	YFDEFATEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLRRYRDEK
Ga0211576_1000128247	3300020438	Marine	MDMPYYFDEFPTEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLKRYRDEK
Ga0211576_100358494	3300020438	Marine	MKYYFDEFATEDIQMWVRECGRDIPQAKLRGDLDDVRTLENVVRSGAKELLQRLRDENE
Ga0211576_103128343	3300020438	Marine	MKYYFDEFATEDIQMWVRECGKSIPRAKLRGDLDDIKTLENIVRSGAKELLQRLRDENE
Ga0211576_103251973	3300020438	Marine	MKYYFDEFSTEDIQMWVRECGKSIPRAKLRGDLDDVKTLENIVRSGAKELLQRYRDENE
Ga0211576_103982951	3300020438	Marine	MNYYFDEFETKDIQDWVRWAGNEIPQAKLRGDLDDVKAWESIVRSGAKELLRRYKDDE
Ga0211558_1000635714	3300020439	Marine	MDMPYYFDEFATEDIQDWVRWAGDEIPKAKLRGENVEAWENIVRSGSKELLKRYRDENE
Ga0211518_102209573	3300020440	Marine	MNMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYRDEK
Ga0211559_100074198	3300020442	Marine	MDMPYYFDEFPTEDIQMWVREAGNEIPRAKLRGDLDDVKAWENIVRSGSKELLKRYKDEK
Ga0211559_100202527	3300020442	Marine	MDMPYYFDEFATEDIQMWVRECGKDIPQAKLRGDLDDVKTLENIVRSGSKELLRRWREGE
Ga0211559_100327093	3300020442	Marine	MNMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELRERYKEESYE
Ga0211559_101279392	3300020442	Marine	MDMPYYFDEFPTEDIQMWVREAGKEIPQAKLRGDLDDVKSWENIVRSGSKELLRRWRDEK
Ga0211559_101934933	3300020442	Marine	MDTPYYFDEFATEDIQMWVRECGKDIPKAKLRGDLDDVKTLENIVRSGSKELLRRWRDGE
Ga0211641_101867453	3300020450	Marine	MDMPYYFEEFATEDIQMWVRECGKDISKAKLRGDLDDVKTLENIVRSGSKELLRRWRDGE
Ga0211473_1000008255	3300020451	Marine	MDMPYYFDEFATEDIQMWVRECGKDMPKAKLRGDLTELEILENVVRSGSKELLRRYREEN
Ga0211473_100596965	3300020451	Marine	MKYYFDEFSTEDIQMWVRECGNSIPRAKLRGDLDDVETLENIVRSGAKELLQRYREENE
Ga0211473_102797684	3300020451	Marine	MNMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELRKRYSEEN
Ga0211473_103826222	3300020451	Marine	MNMPYYFDEFETEDIQDWVRWAGDEIPQAKLRGDLDDVKAWESIVRSGAKELLKRYREEN
Ga0211548_100722864	3300020454	Marine	MDMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGSKELLRRYRDEK
Ga0211548_101130244	3300020454	Marine	MDMPYYFDEFSTEDIQMWVRECGKDIPRARLRGDLTELEILENVVRSGSKELLKRYREEN
Ga0211546_105451963	3300020462	Marine	MDMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGSKE
Ga0211543_103153423	3300020470	Marine	MDMPYYFDEFPTEDIQMWVREAGKEIPRAKMRGDLDDVKNWENIVRSGSKELLRRWREGE
Ga0211547_1000032841	3300020474	Marine	MKYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGATEL
Ga0213867_100051732	3300021335	Seawater	MDMPYYFDEFETEDIQDWVRWAGNEIPKAKLRGEDVEAWENIVRSGAKELLRRYKDDE
Ga0213859_1000095819	3300021364	Seawater	MNMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGEDIEAWENIVRSGAKELLKRYREENE
Ga0213859_100912443	3300021364	Seawater	MDMPYYFDEFPTEDIQMWVREAGKEIPQAKLRGDLDDVKSWENIVRSGSKELLRRWRDGE
Ga0206123_103247063	3300021365	Seawater	MDMPYYFDEFATEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLQRYRDEK
Ga0213860_100286744	3300021368	Seawater	MDMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGDDVEAWENIVRSGAKELLKRYRDEK
(restricted) Ga0233444_100077478	3300024264	Seawater	MDMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWESIVRSGAKELLQRLRDEK
(restricted) Ga0233444_100726403	3300024264	Seawater	MDMPYYFDEFATEDIQMWVRWAGNEIPKAKLRGDDVTDWENIVRSGSKELLQRYREENE
Ga0244776_109141482	3300024348	Estuarine	MKYYFDEFETEDIQMWVRECGKSISRAKLRGDLDDAKTLENIVRSGAKELLQRYRDEK
Ga0208919_10599535	3300025128	Marine	MNMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWEDIVRSGAKELLRRYKDDE
Ga0209232_10042983	3300025132	Marine	MQYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYRDEK
Ga0209232_10139813	3300025132	Marine	MGMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGEDVEAWESIVRSGAKELLKRYRDEK
Ga0209232_10643833	3300025132	Marine	MSMPYYFDEFETEDIQNWVRWAGNEIPKAKLRGDDVTDWENIVRSGSKELLRRYREENE
Ga0209634_10034456	3300025138	Marine	MKYYFDEFATEDIQMWVRECGRDIPQAKLRGDLDDVRTLENVVRSGAKELLQRYRDEK
Ga0209634_11134593	3300025138	Marine	MKYYFDEFATEDIQMWVRECGKAIPQAKLIGDLDEVQTLENIVKSGAKELLQRYKDE
Ga0209645_11932682	3300025151	Marine	MEMPYYFDEFATEDIQMWVRECGKDIPKAKLRGDLDDVKTLENIVRSGSKELLRRWRDGE
Ga0208767_12768171	3300025769	Aqueous	MKYYFDEFSTEDIQDWVRWAGEEIPKAKMRGEDSEAWENIVRSGATELLRRWRDGE
Ga0209631_105392671	3300025890	Pelagic Marine	MDMPYYFDEFATEDIQMWVRECGKDMPKAKLRGDLTELEILENVVRSGSKELLQRYRDE
Ga0209503_102145154	3300027859	Marine	MDMPYYFDEFATEDIQMWVRECGKDIPRAKLRGDLTEVEILENVVRSGSKELLKRYREEN
Ga0257110_10232454	3300028197	Marine	MKYYFDEFATEDIQMWVRECGKSIPRAKLRGDLDDVKTLENIVRSGAKELLQRYRDEK
Ga0257110_10919201	3300028197	Marine	MKYYFDEFATEDIQMWVRECGRDIPQAKLRGDLDDVRTLENVVRSGAKELLQRLRDEN
Ga0183748_10450043	3300029319	Marine	MDMPYYFDEFATEDIQMWVRECGKDIPKAKLRGDLDDVKTLENIVRSGSKELLRRWRDGE
Ga0183755_10044577	3300029448	Marine	MNMPYYFDEFSTEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGSKELLKRYREENE
Ga0183755_10230065	3300029448	Marine	MNMPYYFDEFATEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLRRYREEN
Ga0183755_10340063	3300029448	Marine	MDMPYYFDEFATEDIQMWVRECGKDIPKAKLRGDLTELEILENVVRSGSKELLRRYRDEK
Ga0307488_1000177725	3300031519	Sackhole Brine	MKYYFDEFETEDIQMWVRECGRDIPRAKLRGDLEDIKTLENVVRSGAKELLQRLRDENE
Ga0307488_1002103410	3300031519	Sackhole Brine	MEYYFDEFATEEIQKKMRHAGNNIPRAKLIGDLDDVKKLENIVRSGAKELLQRLRDEK
Ga0315315_102820102	3300032073	Seawater	MSMPYYFDEFETEDIQDWVRWAGDEIPKAKLRGEDVEAWENIVRSGAKELLQRYRDENE
Ga0315315_105351363	3300032073	Seawater	MTMPYYFDEFETEDIQNWVRWAGNEIPKAKLRGDDVTDWENIVRSGSKELLRRYREENE