Scaffold Ga0265325_10000053

Overview

Basic Information

• Taxon OID: 3300031241
• Scaffold ID: Ga0265325_10000053
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77918
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (87.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002758	Metagenome / Metatranscriptome	532	Y
F010961	Metagenome / Metatranscriptome	297	Y
F105773	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0265325_100000533	F010961	GGAGG	MERVSALMAYVVNEGRLCALKPSEWSLLLAGVALCGFATLVFLISGH
Ga0265325_1000005330	F105773	GGA	MDKKAFKLAARLSAIEYMIADLFKKIYALNGTPYKEVAKDHELLRKHLRKMSLPIPDPAMSDLTAGEMMDAFEKLLEKIEIAVQRR
Ga0265325_1000005355	F002758	GAGG	VKLAPVAALGLFIAVTADVDQRVWQNNNSSPCDDDRRCATLSVTAPASNEIPSSHGHISGRPSRRIDANGNRAMVTVQTAYGFNITVHPAYASKFQKFFALLKDRGYKVPANITRCWAPRGTHVPGSNHYIGAACDIQTGWNRGPKFVYHISDIIKQAGLYDGCAFHDCGHVEAIRGTHNSAPNLYAALEKFKSEQSSENYQP