NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000281

Scaffold Ga0119944_1000281


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000281 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8810
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (36.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023571Metagenome / Metatranscriptome209Y
F029416Metagenome / Metatranscriptome188Y
F042214Metagenome / Metatranscriptome158Y
F058099Metagenome / Metatranscriptome135Y
F080645Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_100028112F058099GAGGMNKDLLISQLRLGIDGNSILQILDALCDGMDSGESSQDFCPTLDEIQF
Ga0119944_100028116F080645N/AMTLTSQQINDLATAHCYRVIDNMDADDLFSYAMQMMLQSFDKNPGQGDTDVDMLIEDIWVAEGEDDDSTQEFIAGVVGNELAEEIVKTTQF
Ga0119944_100028119F029416GAGMPTLSQKVYANLFSSDQWDLIYAMVGHALDDDDFDPEDVYTIRNKIHAIFDDND
Ga0119944_10002812F042214AGGMILTTSELIQLVTTGMVEVSDDLILRMSESAESYEDSDWYNDPNCVMSKHHY
Ga0119944_10002817F023571N/AMNLCNWGATMVPHHAVDFSQFNHTTMNFSALTFENHAIKGATKARHTFENGWSISVVAGAKDSGLYGIIGDDTFEVAVIRPNGNMLEDVLPWQTPVQITTLCHLIEML
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