Scaffold Ga0134843_1004813

Overview

Basic Information

• Taxon OID: 3300029775
• Scaffold ID: Ga0134843_1004813
• Source Dataset Name: Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-1-220-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chongqing University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6035
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location

• Location Name: China: Luzhou
• Coordinates
  • Lat. (^o): 28.88
  • Long. (^o): 105.45
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074840	Metagenome / Metatranscriptome	119	N
F090569	Metagenome / Metatranscriptome	108	Y
F103495	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134843_100481310	F103495	GGA	MDNLLQFLIDSGILYMIVSTLLTVGIGFIVGKGVSFKEIQDIIGAIEESYEDGYISPDEARKIYKEIEDVIGQDWYIRLFRLFKR
Ga0134843_10048132	F074840	AGTAGG	MLELNENELAQLNQFIARHERCFDDNKYELTIHLHIIGTGIGCVHKAECENCGECIDLTDYGCW
Ga0134843_10048138	F090569	AGG	MDYKVCGVFDAEKSKVENVYFNLVDNDKFVTLELVDENGNHVICSNICNIDKQSGKIDTCCNVNSYLGFILDSYGRVTIN