NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0168647_100926

Scaffold Ga0168647_100926


Overview

Basic Information
Taxon OID3300029199 Open in IMG/M
Scaffold IDGa0168647_100926 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from shale gas basins in Pennsylvania, USA - 1_Day0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11119
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (15.38%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Shale Gas Basins In Pennsylvania, Usa

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)39.898Long. (o)-79.976Alt. (m)Depth (m)2517
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001968Metagenome / Metatranscriptome610Y
F014004Metagenome / Metatranscriptome266Y
F050990Metagenome / Metatranscriptome144Y
F071779Metagenome / Metatranscriptome122Y
F081278Metagenome / Metatranscriptome114Y
F088534Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0168647_10092610F001968N/AMFDELWTEIQETPGEIFDILELQEEQEKFDFDGYLAADYDY
Ga0168647_10092611F050990N/AMTPDTLNFTGDAVTYLGLIGVISTLIIVVTSFRRYFNSPLKK
Ga0168647_10092612F014004N/AMTTLLLHVTEVLFDFDDEDFTLEEQQSVVDSVLGNTYQVEVLNPNDDDEIADVIVEEVTDATGWCVVSLNYRQVTNTHS
Ga0168647_10092615F088534N/AMFSTTITNPQSFGNTYQWAILSVLPMDSNKKVGGLNSPEIKEALGLSNAARTSLCLMMKEMAGKGLVQRYDYKVGNRRFVTYKRLLPLRKRERIAQFLGL
Ga0168647_10092624F081278N/AMSYTPIRRHATAADFTRWQEMAQSMTVAQLRYAADDCRKVESCWRGYDPMVEGFYSDQAATYGTELFRRRQIR
Ga0168647_1009265F071779N/AMTTKTTYRVIGFGTNEHGFFNEFAHCGTIGYACGFYNGHLQDPEMDGVVLIRVNHEDWEVIQEFGTIPYSVSCGPGGTFKVEKAVDMVLV
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