3300029199: Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA - 1_Day0

Overview

Basic Information

• IMG/M Taxon OID: 3300029199
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127423 | Gp0192912 | Ga0168647
• Sample Name: Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA - 1_Day0
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90030480
• Sequencing Scaffolds: 10
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → Viruses → Predicted Viral	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Subsurface Microbial Communities From Shale Gas Basins In Pennsylvania, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Shale Gas Basins In Pennsylvania, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → shale
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 39.898
  • Long. (^o): -79.976
  • Alt. (m): N/A
  • Depth (m): 2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F011477	Metagenome / Metatranscriptome	290	Y
F013514	Metagenome / Metatranscriptome	270	Y
F014004	Metagenome / Metatranscriptome	266	Y
F018881	Metagenome / Metatranscriptome	232	Y
F029435	Metagenome / Metatranscriptome	188	Y
F032252	Metagenome / Metatranscriptome	180	Y
F035276	Metagenome / Metatranscriptome	172	Y
F048175	Metagenome / Metatranscriptome	148	Y
F048267	Metagenome / Metatranscriptome	148	Y
F050990	Metagenome / Metatranscriptome	144	Y
F057313	Metagenome / Metatranscriptome	136	Y
F067687	Metagenome / Metatranscriptome	125	N
F071779	Metagenome / Metatranscriptome	122	Y
F077031	Metagenome / Metatranscriptome	117	Y
F080982	Metagenome / Metatranscriptome	114	Y
F081278	Metagenome / Metatranscriptome	114	Y
F088534	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168647_100926	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11119
Ga0168647_101050	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9980
Ga0168647_101054	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9952
Ga0168647_101171	Not Available	9054
Ga0168647_101439	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	7672
Ga0168647_101494	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	7451
Ga0168647_102182	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5336
Ga0168647_102993	All Organisms → Viruses → Predicted Viral	4121
Ga0168647_104277	All Organisms → Viruses → Predicted Viral	3045
Ga0168647_105805	All Organisms → Viruses → Predicted Viral	2320

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168647_100926	Ga0168647_10092610	F001968	MFDELWTEIQETPGEIFDILELQEEQEKFDFDGYLAADYDY
Ga0168647_100926	Ga0168647_10092611	F050990	MTPDTLNFTGDAVTYLGLIGVISTLIIVVTSFRRYFNSPLKK
Ga0168647_100926	Ga0168647_10092612	F014004	MTTLLLHVTEVLFDFDDEDFTLEEQQSVVDSVLGNTYQVEVLNPNDDDEIADVIVEEVTDATGWCVVSLNYRQVTNTHS
Ga0168647_100926	Ga0168647_10092615	F088534	MFSTTITNPQSFGNTYQWAILSVLPMDSNKKVGGLNSPEIKEALGLSNAARTSLCLMMKEMAGKGLVQRYDYKVGNRRFVTYKRLLPLRKRERIAQFLGL
Ga0168647_100926	Ga0168647_10092624	F081278	MSYTPIRRHATAADFTRWQEMAQSMTVAQLRYAADDCRKVESCWRGYDPMVEGFYSDQAATYGTELFRRRQIR
Ga0168647_100926	Ga0168647_1009265	F071779	MTTKTTYRVIGFGTNEHGFFNEFAHCGTIGYACGFYNGHLQDPEMDGVVLIRVNHEDWEVIQEFGTIPYSVSCGPGGTFKVEKAVDMVLV
Ga0168647_101050	Ga0168647_10105015	F048267	MTDEEWETSLKSMNEEAKKRVDEEIDKIKYNVVKEIINRELKND
Ga0168647_101050	Ga0168647_10105020	F035276	MTKSYISCYNNETKELEHFEVPYSIFVYIRQLEDEIKYASGGVKRLYPFRFGEEE
Ga0168647_101054	Ga0168647_10105411	F018881	MTPKLLNSDGNYDEWCEEELLKCYKDAAEYDDVLFGDHDYSYVWLDKGP
Ga0168647_101171	Ga0168647_10117117	F057313	MTEKPVRRYELCTERLETLEDVKKVLKALQIRIDTDNPLYEELEYYFSTEVVPLGYLKVYEKVGDKIYEMSMEEIAQMGSELLNQNEETN
Ga0168647_101439	Ga0168647_1014395	F011477	MSVAVIWAWVLANEAAVATILLIVSELLGAVPQVKSNGLASFVILQVRKVLENKGAKDPT
Ga0168647_101494	Ga0168647_1014946	F048175	MASGSFQFRYNHSNENAAWHTNPDAKFILPKEDVDIICDDPYLNENQFLEMVRRFFIACGYTEKQWKNALKEHLEEVEKTE
Ga0168647_102182	Ga0168647_10218216	F029435	MTKKDLQEILTPEFLSTLHTVVECCNWDVDMIETMEFCDWCYNIAGQPKPQYDMGIMMEDEE
Ga0168647_102182	Ga0168647_1021828	F067687	MIDKKEVAQAIVDAADEVFSNGGRIRDGFASALRVLADTVVPEDYKCFYGDKEYDTGMEVRNEEIREAILSIATELEVL
Ga0168647_102993	Ga0168647_10299310	F013514	MTIEEIQKFLDDNNTTLEEYLRDNMITDEDRKYVDKIWVDAIYRNLGEDTP
Ga0168647_102993	Ga0168647_1029933	F032252	MKLYRYKKDGNLYKLYEQKMPYYELQAVPYFPNQGILAKSKRSISMNDFEVVAEL
Ga0168647_104277	Ga0168647_1042776	F080982	MTSQSPRIYIYKITFEEVLYYYYGVHKEDVFDEEYWGSPYTNKWVWELYTPKKQILEVFPYTDDGWIEGNKVEKRIIKEFYNDDKWCLNENCA
Ga0168647_105805	Ga0168647_1058051	F077031	SIVAVAVASFLAFLTVKCDISEKDVLKYYNELRKLIKWDLPDTMIDEFDNQLNQRINEDPELLQQKIENEVDYAIIDYEIEEQRSRMINMRNQNILEEINKPKYDNLQKLIVKNAIYYEFADGTMGIRGAWVAPDPREIPFE