NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307278_10000004

Scaffold Ga0307278_10000004


Overview

Basic Information
Taxon OID3300028878 Open in IMG/M
Scaffold IDGa0307278_10000004 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)145274
Total Scaffold Genes147 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)102 (69.39%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009190Metagenome / Metatranscriptome322Y
F021021Metagenome / Metatranscriptome221Y
F042600Metagenome / Metatranscriptome158Y
F068047Metagenome / Metatranscriptome125N
F074184Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0307278_10000004103F074184GGTGGMPRTFVVLLGGLAVAVLVYVLSSGRVFFLPLILLLPFGLFIGRRRRS
Ga0307278_10000004129F021021N/AMEPKSRPSAQYAEAGGVLVGVLFASVAVGLLIGWLSGSPGIGILIGAVIGIPLATYTVYWCYRDSF
Ga0307278_10000004135F068047GGAGMMKLSVLIALLLTTLVVAGCGSKKSTTPTTTVPNVPPAATTSDQWASRVVDWFLRPLSPDLLVIGNFANSQVRFYIETQNQQALQTIYARMNDLQRCDDHLTRVGPPPGNDQQLKKIGNHFRQACAVYAKIGATLSRATRLLSSGKQDQVAKGEDALRGIGATTRTAAVELTAGIKLAQGRGDFRRAGLKPSV
Ga0307278_1000000454F042600N/AMSIYELDIGWATTASERRYLHWMLVACDEVGGVFLTARDDMLAVLFNGDRGGFDALARTLAPETQGTGS
Ga0307278_100000046F009190N/AMPEEKRPDIRPQLREYLAWYEEVLARVESGAVVAPGEQERLTEEASAVAHLLDLLDSSADEPAS
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