Scaffold Ga0307278_10000003

Overview

Basic Information

• Taxon OID: 3300028878
• Scaffold ID: Ga0307278_10000003
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 200745
• Total Scaffold Genes: 214
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 150 (70.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022303	Metagenome / Metatranscriptome	215	Y
F025886	Metagenome / Metatranscriptome	200	Y
F052097	Metagenome	143	Y
F064545	Metagenome / Metatranscriptome	128	Y
F079309	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307278_1000000312	F052097	GGA	VRRRPRFGTIALALLALGVVGAAVVDTVGKSVFRQQSHAKAHKVLPVSEALQSDRDAIAGRLRTDKASGVLYYVDSACGLHALRLPSLAATPAPRDGGCRALVSPASAPPGWSLWPRNTPLAARCDEHRRVIVSAAAGPSLPMIGGCAPAWRPDGSMTYIRRGAIVQFPRTGRAQVLRSRSQLAGALEGQPSLRGVGGWHAIRVAWLSPARFGVLASNGSRTVLAVFSGRRIVALKTRVPSRVTELRGSPRGNYVVLGTAGGVRVYDARRRDLPRVRRFGILVSVAWSSDESWRAVAQEQKVLLVGPHVSVVLPLRALDLAWTRDLS
Ga0307278_10000003171	F025886	N/A	MAIDVAGAIQCGCGHVLWGEDEEQLLQDADLHVRTAHPELVGTLSPLELARPAATDEASA
Ga0307278_10000003208	F079309	N/A	MAAREMGGLSLADALMLCELLANTDPARYEKAALRWLERFIDERTPPLTEVALAASALAELRHGRRNTGVETLKRLLHR
Ga0307278_10000003209	F064545	GGA	VQVYALTSTQIASETLDLFLTQEAAEAELREILEDEPEWVNVLRVVPIELDGRSLSAN
Ga0307278_1000000327	F022303	N/A	MPRFLPIGKEAKGAAGFLLAALPALGALLTALAISGDLIGRMARNHPLASFGAFGSASLAVFLGAVAAYGLQEGSREERGVVSLGILVLGAALVFGVYAGVETWGDRAQPSITVTPKSGSLVAVSVHGIGLRSSDHIVVEVEQLLRGSDQQGRPTWRPGQPLYGASLGPNGSGEIAHTVSLSLPAGDFDDLGARAWVGDEPRPCYTRGNTTGCVRVHIPRPQERPQLSVVWETFVRAPRLLVRLRARNLPQRPARSMTLRVFGIAAGQPRRNLAEWSLAPNAGGEFDRSLAIVVGRAYTDVCVVASISTREPECPAPVEDGTVWTELAVPPAQ