NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307281_10002307

Scaffold Ga0307281_10002307


Overview

Basic Information
Taxon OID3300028803 Open in IMG/M
Scaffold IDGa0307281_10002307 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5292
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072036Metagenome / Metatranscriptome121Y
F080015Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307281_100023074F080015GGAGMSTTLVVNPRDDTPFVALAERLVADGVRSPNELQARLRREYPDAVVRARELDGEAFTIWYVYRDGHWVTGSPKHPKGG
Ga0307281_100023075F072036AGGAGGVSDLDSDLRATAEDIAADAARLAAIEEEKARLGTDDPRLLELSQEGEEIARRLVPKTAAESELAGEALATDGGLA

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