Scaffold Ga0265338_10005502

Overview

Basic Information

• Taxon OID: 3300028800
• Scaffold ID: Ga0265338_10005502
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16509
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066887	Metagenome / Metatranscriptome	126	Y
F099471	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265338_1000550216	F066887	GGA	MTILRFAGVVVVFSGVALFGVYFIGGNARVANGAVPRSSWLGPGPRRGMRIIALGILMLLCAFIIGLFMPNGA
Ga0265338_100055027	F099471	AGG	MARSNDTFSNTFIEGLRRNLARWKTELAMLDVGEEVRGQFLQTSEVRAWIEADEAIFARYERRRA