Metagenome Family F099471

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099471
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	65 residues
Representative Sequence	MARSSDAFSDTFIEGLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYEARRA
Number of Associated Samples	63
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.35 %
% of genes near scaffold ends (potentially truncated)	17.48 %
% of genes from short scaffolds (< 2000 bps)	67.96 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.485 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere (15.534 % of family members)
Environment Ontology (ENVO)	Unclassified (71.845 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (77.670 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.29% β-sheet: 0.00% Coil/Unstructured: 38.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01479	S4	3.88
PF00163	Ribosomal_S4	3.88
PF08085	Entericidin	3.88
PF06055	ExoD	2.91
PF08281	Sigma70_r4_2	2.91
PF14213	DUF4325	1.94
PF02798	GST_N	0.97
PF00561	Abhydrolase_1	0.97
PF00313	CSD	0.97
PF08410	DUF1737	0.97
PF00239	Resolvase	0.97
PF01272	GreA_GreB	0.97
PF00408	PGM_PMM_IV	0.97
PF05036	SPOR	0.97
PF00462	Glutaredoxin	0.97
PF13531	SBP_bac_11	0.97
PF00702	Hydrolase	0.97
PF01722	BolA	0.97
PF06628	Catalase-rel	0.97
PF04542	Sigma70_r2	0.97
PF13610	DDE_Tnp_IS240	0.97
PF12680	SnoaL_2	0.97
PF00199	Catalase	0.97
PF06210	DUF1003	0.97
PF07568	HisKA_2	0.97
PF13091	PLDc_2	0.97
PF02627	CMD	0.97
PF13356	Arm-DNA-bind_3	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0522	Ribosomal protein S4 or related protein	Translation, ribosomal structure and biogenesis [J]	3.88
COG5510	Predicted small secreted protein	Function unknown [S]	3.88
COG3932	Exopolysaccharide synthesis protein ExoD	Cell wall/membrane/envelope biogenesis [M]	2.91
COG0753	Catalase	Inorganic ion transport and metabolism [P]	1.94
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.97
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.97
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.97
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.97
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.97
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.97
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.97
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.97
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.97
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.97
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.97
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.97
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.49 %
Unclassified	root	N/A	49.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.49 %
Unclassified	root	N/A	49.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.49 %
Unclassified	root	N/A	49.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.51 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	38.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.51 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	17.48 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.62 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.53 %
Parvibaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae	6.80 %
Alphaproteobacteria bacterium SO-S41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium SO-S41	1.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.97 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.53 %
Parvibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum	6.80 %
Alphaproteobacteria bacterium SO-S41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium SO-S41	1.94 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.97 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.53 %
Parvibaculum sedimenti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → Parvibaculum sedimenti	6.80 %
Alphaproteobacteria bacterium SO-S41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium SO-S41	1.94 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.97 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.53 %
Parvibaculum sedimenti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → Parvibaculum sedimenti	6.80 %
Alphaproteobacteria bacterium SO-S41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium SO-S41	1.94 %
Sinorhizobium medicae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium medicae	0.97 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2435253	All Organisms → cellular organisms → Bacteria	2096	Open in IMG/M
3300000787\|JGI11643J11755_11174729	Not Available	676	Open in IMG/M
3300003215\|JGI25153J46596_10001806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12687	Open in IMG/M
3300004114\|Ga0062593_102711051	Not Available	564	Open in IMG/M
3300004463\|Ga0063356_105588033	Not Available	539	Open in IMG/M
3300005327\|Ga0070658_10036123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → Parvibaculum sedimenti	3982	Open in IMG/M
3300005327\|Ga0070658_10307498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1352	Open in IMG/M
3300005327\|Ga0070658_10308912	Not Available	1349	Open in IMG/M
3300005327\|Ga0070658_10484667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1067	Open in IMG/M
3300005327\|Ga0070658_11090004	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300005333\|Ga0070677_10354063	Not Available	761	Open in IMG/M
3300005333\|Ga0070677_10598330	Not Available	610	Open in IMG/M
3300005336\|Ga0070680_100021732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5103	Open in IMG/M
3300005336\|Ga0070680_100988841	Not Available	726	Open in IMG/M
3300005339\|Ga0070660_100403338	Not Available	1131	Open in IMG/M
3300005344\|Ga0070661_100381216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1111	Open in IMG/M
3300005344\|Ga0070661_100621343	Not Available	875	Open in IMG/M
3300005344\|Ga0070661_100635565	Not Available	865	Open in IMG/M
3300005344\|Ga0070661_100810811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M
3300005354\|Ga0070675_100194416	Not Available	1759	Open in IMG/M
3300005354\|Ga0070675_102231717	Not Available	504	Open in IMG/M
3300005364\|Ga0070673_101983019	Not Available	552	Open in IMG/M
3300005456\|Ga0070678_101480451	Not Available	635	Open in IMG/M
3300005458\|Ga0070681_10766279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → Parvibaculum sedimenti	882	Open in IMG/M
3300005458\|Ga0070681_11146527	Not Available	699	Open in IMG/M
3300005513\|Ga0077120_1067387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1812	Open in IMG/M
3300005529\|Ga0070741_10102917	All Organisms → cellular organisms → Bacteria	3024	Open in IMG/M
3300005530\|Ga0070679_100062076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3724	Open in IMG/M
3300005535\|Ga0070684_100947170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium SO-S41	807	Open in IMG/M
3300005539\|Ga0068853_101128229	Not Available	756	Open in IMG/M
3300005547\|Ga0070693_100492203	Not Available	868	Open in IMG/M
3300005548\|Ga0070665_100273556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium medicae	1691	Open in IMG/M
3300005548\|Ga0070665_100365029	All Organisms → cellular organisms → Bacteria → Proteobacteria	1450	Open in IMG/M
3300005548\|Ga0070665_101466538	Not Available	691	Open in IMG/M
3300005563\|Ga0068855_100068231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → Parvibaculum sedimenti	4140	Open in IMG/M
3300005563\|Ga0068855_100107522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3205	Open in IMG/M
3300005563\|Ga0068855_100498256	Not Available	1324	Open in IMG/M
3300005577\|Ga0068857_101424959	Not Available	674	Open in IMG/M
3300005614\|Ga0068856_100063932	Not Available	3635	Open in IMG/M
3300005614\|Ga0068856_102262690	Not Available	552	Open in IMG/M
3300005841\|Ga0068863_102407852	Not Available	536	Open in IMG/M
3300006237\|Ga0097621_100354621	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300009093\|Ga0105240_10049238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5320	Open in IMG/M
3300009093\|Ga0105240_10118806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3186	Open in IMG/M
3300009174\|Ga0105241_11906187	Not Available	583	Open in IMG/M
3300009176\|Ga0105242_11317213	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300009551\|Ga0105238_10050126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4203	Open in IMG/M
3300009551\|Ga0105238_10809262	Not Available	953	Open in IMG/M
3300009551\|Ga0105238_11335854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	743	Open in IMG/M
3300010371\|Ga0134125_10049458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4681	Open in IMG/M
3300010371\|Ga0134125_10064035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4092	Open in IMG/M
3300010371\|Ga0134125_11057211	Not Available	889	Open in IMG/M
3300010396\|Ga0134126_10063912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4581	Open in IMG/M
3300012942\|Ga0164242_10071401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3151	Open in IMG/M
3300012956\|Ga0154020_10028181	Not Available	6107	Open in IMG/M
3300012956\|Ga0154020_10419547	Not Available	1142	Open in IMG/M
3300012984\|Ga0164309_10249309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1251	Open in IMG/M
3300013307\|Ga0157372_11385373	Not Available	811	Open in IMG/M
3300013307\|Ga0157372_11541324	Not Available	765	Open in IMG/M
3300013307\|Ga0157372_12175453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300014326\|Ga0157380_10308340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1461	Open in IMG/M
3300020202\|Ga0196964_10482745	Not Available	604	Open in IMG/M
3300021406\|Ga0210386_11353410	Not Available	598	Open in IMG/M
3300025909\|Ga0207705_10045628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3149	Open in IMG/M
3300025909\|Ga0207705_10081625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → Parvibaculum sedimenti	2356	Open in IMG/M
3300025911\|Ga0207654_10065458	All Organisms → cellular organisms → Bacteria	2140	Open in IMG/M
3300025911\|Ga0207654_10421847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	931	Open in IMG/M
3300025912\|Ga0207707_10077404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2904	Open in IMG/M
3300025912\|Ga0207707_10732433	Not Available	828	Open in IMG/M
3300025913\|Ga0207695_10105977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → Parvibaculum sedimenti	2798	Open in IMG/M
3300025913\|Ga0207695_10126217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → Parvibaculum sedimenti	2520	Open in IMG/M
3300025913\|Ga0207695_10209923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1858	Open in IMG/M
3300025913\|Ga0207695_10330440	Not Available	1413	Open in IMG/M
3300025913\|Ga0207695_10981108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium SO-S41	725	Open in IMG/M
3300025914\|Ga0207671_10347993	Not Available	1175	Open in IMG/M
3300025920\|Ga0207649_10301413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1172	Open in IMG/M
3300025920\|Ga0207649_10437652	Not Available	985	Open in IMG/M
3300025921\|Ga0207652_11049775	Not Available	714	Open in IMG/M
3300025924\|Ga0207694_10019787	All Organisms → cellular organisms → Bacteria	5093	Open in IMG/M
3300025924\|Ga0207694_11352843	Not Available	602	Open in IMG/M
3300025925\|Ga0207650_10223191	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300025926\|Ga0207659_10656560	Not Available	897	Open in IMG/M
3300025926\|Ga0207659_10732435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	847	Open in IMG/M
3300025936\|Ga0207670_11935844	Not Available	501	Open in IMG/M
3300025949\|Ga0207667_10303267	Not Available	1632	Open in IMG/M
3300025949\|Ga0207667_11036668	Not Available	806	Open in IMG/M
3300026041\|Ga0207639_10918666	Not Available	818	Open in IMG/M
3300026041\|Ga0207639_11571412	Not Available	617	Open in IMG/M
3300026078\|Ga0207702_10150155	Not Available	2119	Open in IMG/M
3300026088\|Ga0207641_11044248	Not Available	815	Open in IMG/M
3300026121\|Ga0207683_11935888	Not Available	538	Open in IMG/M
3300026142\|Ga0207698_10838070	Not Available	924	Open in IMG/M
3300028379\|Ga0268266_10052467	All Organisms → cellular organisms → Bacteria → Proteobacteria	3502	Open in IMG/M
3300028800\|Ga0265338_10005502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16509	Open in IMG/M
3300031235\|Ga0265330_10076658	Not Available	1443	Open in IMG/M
3300031250\|Ga0265331_10027222	Not Available	2868	Open in IMG/M
3300031711\|Ga0265314_10036787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3553	Open in IMG/M
3300032893\|Ga0335069_10716388	Not Available	1136	Open in IMG/M
3300033475\|Ga0310811_10032993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6894	Open in IMG/M
3300033475\|Ga0310811_10051128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5503	Open in IMG/M
3300033475\|Ga0310811_10151176	All Organisms → cellular organisms → Bacteria → Proteobacteria	2920	Open in IMG/M
3300033475\|Ga0310811_10173574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2676	Open in IMG/M
3300033475\|Ga0310811_10319893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → Parvibaculum sedimenti	1768	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	69.90%
Environmental	Environmental	28.16%
Engineered	Engineered	1.94%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	69.90%
Terrestrial	Environmental → Terrestrial	28.16%
Wastewater	Engineered → Wastewater	1.94%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	49.51%
Soil	Environmental → Terrestrial → Soil	28.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.42%
Activated Sludge	Engineered → Wastewater → Activated Sludge	1.94%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	29.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	15.53%
Loam	Environmental → Terrestrial → Soil → Loam	10.68%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.94%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	1.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%
Sand	Environmental → Terrestrial → Soil → Sand	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	29.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.94%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	15.53%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	13.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	12.62%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	8.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	1.94%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003215	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005513	Combined assembly of arab plate scrape CL_Cvi (Combined Assembly)	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012942	Miracle-Growth compost microbial communities from Emeryville, California, USA - Original compost - Miracle growth compost (MG)	Environmental	Open in IMG/M
3300012956	Active sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MG	Engineered	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300020202	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_24352537	3300000033	Soil	VSNPHLPRNNDAFTRTFIDGLRRDTERWKAELSLLDAGDDAYGSLLQTAELKRWIEAGEAIFARYEYRRDN*
JGI11643J11755_111747292	3300000787	Soil	MAHGDAFSETFIEGLRRDISRWKAELSMLDRGQDRGGTDLLTYELRSWIEAGEAV
JGI25153J46596_1000180611	3300003215	Arabidopsis Rhizosphere	VAHGDAFSETFIEGLRRDLARWRTELAMLDVDQVPRGLFFQTSELRAWIDAGEDILARYEEHRA*
Ga0062593_1027110511	3300004114	Soil	MMAHGDAFSDTFIEGLRRDISRWKAELSMLDEGQPGNGKRLLTSELRAWIEAGEAVFVRYENRRG*
Ga0063356_1055880332	3300004463	Arabidopsis Thaliana Rhizosphere	MARGDAFAETFIEGLRRDISRWKADLSTLDVGGEVRGEFVQTSELRAWIEAGEEIFARY
Ga0070658_100361235	3300005327	Corn Rhizosphere	MARGDAFSETFIAGLRRDISRWKVELSMLDAGQEGSGSSLLTSELRSWIEAGEAVFARYEKRRK*
Ga0070658_103074981	3300005327	Corn Rhizosphere	MARDSDAFSSTFIEGLRRDLARWKAELALLDVGEEARGLYLQTSELRTWIEAGEAIFARYERRRA*
Ga0070658_103089122	3300005327	Corn Rhizosphere	MAHGDAFSETFIEGLRRDISRWKAELSMLDRGQDRGGTDLLTYELRSWIEAGEAVFARYEKRRT*
Ga0070658_104846672	3300005327	Corn Rhizosphere	MDPATTAFIEELRRDIAQWKLDLAKLDISREAQGEYLQTSEIRAWIDAGESILTRYESRRS*
Ga0070658_110900041	3300005327	Corn Rhizosphere	MARDTDAFSTTFIEDLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYEARRA*
Ga0070677_103540631	3300005333	Miscanthus Rhizosphere	MAQGDAFSDTFIEGLRRDLARWKSELAMLDIGEESRGEYLQTSELRAWIDAGEAIFARYERRRV*
Ga0070677_105983302	3300005333	Miscanthus Rhizosphere	MAQDNDAFSDTFIEGLRRDTDRWKAELSLLDVGAERRGPYLQTSELRAWIEAGEKIFAKYERRRA*
Ga0070680_1000217325	3300005336	Corn Rhizosphere	MVASERLGDEALQMARGDAFSETFIAGLRRDISRWKAELAMLDAGQEGSGSSLLTSELRSWIEAGEVVFTRYEKRRK*
Ga0070680_1009888411	3300005336	Corn Rhizosphere	MARSSDKFSSTFIEGIRRDLARWKAELAMLDVGEEILGQYLQTSELRAWIEAGEAIFARYERRRA*
Ga0070660_1004033382	3300005339	Corn Rhizosphere	MSQTATRFIEGLRRDIARWKVDLASLDVGQEAQAEYLQTSEIRAWIERIEGIIDRYESRHAQV*
Ga0070661_1003812163	3300005344	Corn Rhizosphere	MARDSDAFSSTFIEGLRRDLARWKTELATLDVGEESRGEYLQTSELRAWIEAGEAIFARYESRRA*
Ga0070661_1006213431	3300005344	Corn Rhizosphere	MTRDSDAFCDAFVEGLRRDISRWKAELSILDTGQEARGQYLQTSELRGWIEAGEAIFARYQSRRL*
Ga0070661_1006355653	3300005344	Corn Rhizosphere	MIVRSSDAFSATFVEGLRRDISRWKAELLLLDVGQEARGEYLQTSELRAWIEAGEAIFARYESRRL*
Ga0070661_1008108112	3300005344	Corn Rhizosphere	MARYSDAFSDTFIEGLRRDLERWKAELALLDVGEESRGLYLQTSELRTWIEAGEAIFARYERRRA*
Ga0070675_1001944163	3300005354	Miscanthus Rhizosphere	MGRGLGSTMAQGDAFSDTFIEGLRRDLARWKSELAMLDIGEESRGEYLQTSELRAWIDAGEAIFARYERRRV*
Ga0070675_1022317171	3300005354	Miscanthus Rhizosphere	SDTFIEGLRRDTARWKAELSLLDVGAERRGPYLQTSELRAWIEAGEKIFAKYERRRA*
Ga0070673_1019830191	3300005364	Switchgrass Rhizosphere	MGRGLGSTMAQGDAFSDTFIEGLRRDLARWKSELAMLDIGEEARGEYLQTSELRAWIDAGEAIFARYER
Ga0070678_1014804512	3300005456	Miscanthus Rhizosphere	MGRGLGSTMAQGDAFSDTFIEGLRRDLARWKSELAMLDIGEESRGEYLQTSELRAWIDAGEAIFARYER
Ga0070681_107662792	3300005458	Corn Rhizosphere	MGQTTAAFIENLRRDIARWKADLAGLDVGQEAQGEYLQTSEIRAWIEAGESILARYESRRA*
Ga0070681_111465272	3300005458	Corn Rhizosphere	MTRGDAFGETFIAGLRRDISRWKAELSMLDAGQEGSGSRLLTSELRSWIEAGEAVFIRYEKRRK*
Ga0077120_10673873	3300005513	Arabidopsis Rhizosphere	VTHGDAFSETFIEGLRRDLARWRTELAMLDVDQVPRGLFFQTSELRAWIDAGEDILARYEGHRG*
Ga0070741_1010291710	3300005529	Surface Soil	MARNTDAFSNTFIEDLRRDLARWKTELAMLDIGEESRGEYLQTSELRAWIEAGEAIFARYEARRA*
Ga0070679_10006207610	3300005530	Corn Rhizosphere	MVASERLGDEALQMARGDAFSETFIAGLRRDISRWKAELAMLDAGQEGSGPRLLTSELRSWIEAGEVVFTRYEKRRK*
Ga0070684_1009471703	3300005535	Corn Rhizosphere	MAHGDAFSETFIESLRRDISRWKSELSMLDEGQPEGGRGRLTSELRSWLEAGEAVFKRYEDRRA*
Ga0068853_1011282291	3300005539	Corn Rhizosphere	MARSNDNFSDTFIEGLRRDLARWKTELAMLDVGEEIRGQFLQTSELRAWIEAGDAIFARYERRRA*
Ga0070693_1004922033	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTRGDAFGETFIAGLRRDISRWKAELSMLDAGQEGSGSRLLTSELRSWIEAGEAVFARYEKRRK*
Ga0070665_1002735562	3300005548	Switchgrass Rhizosphere	MARNSDAFSETFLEGLRRDTARWKSELSLLDADAESGRRRSETSELRSWIEAGEAIFARYENRRA*
Ga0070665_1003650292	3300005548	Switchgrass Rhizosphere	VAHGDAFSETFIEGLRRDLARWRTELKMLDVDQVPRGLFFQTSELRAWIDAGENILARYEEHRG*
Ga0070665_1014665381	3300005548	Switchgrass Rhizosphere	ETFIEGLRRDISRWKADLATLDVGGEVRGDYLQTSELRAWIEAGEKIFARYARNRGQ*
Ga0068855_1000682317	3300005563	Corn Rhizosphere	MTRGDAFSETFIAGLRRDISRWKAELSMLDAGQEGSGSRLLTSELRSWIEAGEAVFARYEKRRK*
Ga0068855_1001075222	3300005563	Corn Rhizosphere	MARDSDSFSRTFIEGLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYEARRA*
Ga0068855_1004982562	3300005563	Corn Rhizosphere	MARNTDAFSNTFIEDLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYESRRA*
Ga0068857_1014249592	3300005577	Corn Rhizosphere	MARSSDAFSDTFIEGLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYEARRA*
Ga0068856_1000639326	3300005614	Corn Rhizosphere	MARNSDAFSNTFIEDLRRDLARWKTELAMLDIGEETRGEYLQTSELRAWIEAGEAIFARYEARRA*
Ga0068856_1022626901	3300005614	Corn Rhizosphere	MRRNSNAFSDTFIEGLRRDLSRWKAELAMLDVGEHAEGQYLQTSELRAWIQAGEAIFARYENRRGEEK*
Ga0068863_1024078522	3300005841	Switchgrass Rhizosphere	MARNSDAFSEAFLEGLRRDTARWKAELSLLDADAEASGPRLETAELKSWIEAGEAIFARYEKRRN*
Ga0097621_1003546214	3300006237	Miscanthus Rhizosphere	LMMAHGDAFSDTFIEGLRRDISRWKAELSMLDEGQPGNGKRLLTSELRAWIEAGEAVFVRYENRRG*
Ga0105240_100492384	3300009093	Corn Rhizosphere	MARNSDAFSETFIEGLRRDTSRWKAELSLLDADAQAKGSRLETAELKSWIEAGEAIFARYETRRG*
Ga0105240_101188067	3300009093	Corn Rhizosphere	MARDSDAFSSTFIEGLRRDLARWKAELTLLDVGEESHGEYLQTSELRAWIEAGEAIFARYEARRA*
Ga0105241_119061871	3300009174	Corn Rhizosphere	MARNNDAFTDTFIDGLRRDTTRWKSELSLLDVGDESGGQRLETSELKSWIEAGEAIFARYETRRT*
Ga0105242_113172132	3300009176	Miscanthus Rhizosphere	MMAHGDAFSDTFIEGLRRDISRWKAERSMLDEGQPGNGKRLLTSELRAWIEAGE
Ga0105238_100501265	3300009551	Corn Rhizosphere	MSRGDAFSETFIAGLRRDISRWKAELSMLDAGQEGSGSSLLTSELRSWIESGEAVFARYEKRRK*
Ga0105238_108092622	3300009551	Corn Rhizosphere	MAHGDAFSETFIEGLRRDISRWKAELSMLDRGQDRSGTDLLTYELRSWIEAGEAVFARYEKRRT*
Ga0105238_113358542	3300009551	Corn Rhizosphere	MGRDSDAFSDTFIEGLRRDTARWKAELTLLDVGEERRGPYLATSELRSWIEAGEKIFARYERRRA*
Ga0134125_100494585	3300010371	Terrestrial Soil	MARDSDAFSSTFIEGLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYESRRA*
Ga0134125_100640357	3300010371	Terrestrial Soil	MARDSDAFSSTFIEGLRRDLTRWKTELAMLDVGEESRGEYLQTSELRAWIEEG
Ga0134125_110572111	3300010371	Terrestrial Soil	MASSNDNFSDTFIEGLRRDLARWKTELAMLDVGEEIRGQFLQTSELRAWIEAGDAIF
Ga0134126_100639126	3300010396	Terrestrial Soil	MARDSDAFSSTFIEGLRRDLARWKAELALLDVGEESQGEYLQTSELRAWIEAGEAIFSRYEARRA*
Ga0164242_100714012	3300012942	Compost	VPRHNDAFTRTFIDGLRRDTERWKAELSLLDAGDDAQGQGLQTAELKRWIEAGEAIFARYEYRRDS*
Ga0154020_1002818110	3300012956	Active Sludge	MARKNDAFSETFIEGLRRDTARWKAELSMLDAGDKAKGRHLQTSELKAWIEAGEAIFARYERRRA*
Ga0154020_104195472	3300012956	Active Sludge	MVWCGHPQAQEPEMARNSDAFSEAFMESLRRDTARWKSELSLLDADANAGRRRLETSELRSWIEAGEAIFARYEKRRG*
Ga0164309_102493092	3300012984	Soil	MARNSDAFSETFIEGLRRDTSRWKAELSLLDADAQARGTRLETAELKSWIEAGEAIFARYETRRG*
Ga0157372_113853732	3300013307	Corn Rhizosphere	MARENDKFSNTFIEGLRRDLLRWKTELAMLDVGEETRGQFLQTSEIRGWIEAGEAIFARYESRRA*
Ga0157372_115413242	3300013307	Corn Rhizosphere	MARNSDAFSNTFIEDLRRDLARWKTELAMLDVGEETRGEYLQTSELRAWIEAGEAIFARYEARRA*
Ga0157372_121754531	3300013307	Corn Rhizosphere	MARDTDAFSTTFIEDLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARY
Ga0157380_103083403	3300014326	Switchgrass Rhizosphere	MAQDNDAFSDTFIEGLRRDTARWKAELSLLDVGAERRGPYLQTSELRAWIEAGEKIFAKYERRRV
Ga0196964_104827451	3300020202	Soil	MSQDTDAFTDTFIRGLRRDVSRWKAEFSMLDVGAEVQGPYLQTSELRAWIDAGEEIFARYERRES
Ga0210386_113534101	3300021406	Soil	MARDTDAFSNTFIEDLRRDLARWKTELAMLDVGEEIRGEYLQTSELRAWIEAGEAIFARYEARRP
Ga0207705_100456285	3300025909	Corn Rhizosphere	MARDSDAFSSTFIEGLRRDLARWKAELALLDVGEEARGLYLQTSELRTWIEAGEAIFARYERRRA
Ga0207705_100816253	3300025909	Corn Rhizosphere	MARGDAFSETFIAGLRRDISRWKVELSMLDAGQEGSGSSLLTSELRSWIEAGEAVFARYEKRRK
Ga0207654_100654581	3300025911	Corn Rhizosphere	MARDTDAFSTTFIEDLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYEARRA
Ga0207654_104218472	3300025911	Corn Rhizosphere	MARNSDAFSETFIEGLRRDTSRWKAELSLLDADAQAKGSRLETAELKSWIEAGEAIFARYETRRG
Ga0207707_100774043	3300025912	Corn Rhizosphere	MVASERLGDEALQMARGDAFSETFIAGLRRDISRWKAELAMLDAGQEGSGSSLLTSELRSWIEAGEVVFTRYEKRRK
Ga0207707_107324332	3300025912	Corn Rhizosphere	MARSSDKFSSTFIEGIRRDLARWKAELAMLDVGEEILGQYLQTSELRAWIEAGEAIFARYERRRA
Ga0207695_101059775	3300025913	Corn Rhizosphere	MTRGDAFSETFIAGLRRDISRWKAELSMLDAGQEGSGSRLLTSELRSWIEAGEAVFARYEKRRK
Ga0207695_101262173	3300025913	Corn Rhizosphere	MARGDAFSETFIAGLRRDISRWKAELSMLDAGQEGSGSSLLTPELRSWIEAREVVFTRCEKRRK
Ga0207695_102099232	3300025913	Corn Rhizosphere	MARNSDAFSNTFIEDLRRDLARWKTELAMLDIGEETRGEYLQTSELRAWIEAGEAIFARYEARRA
Ga0207695_103304403	3300025913	Corn Rhizosphere	MARDSDAFSSTFIEGLRRDLARWKAELTLLDVGEESHGEYLQTSELRAWIEAGEAIFARYEARRA
Ga0207695_109811081	3300025913	Corn Rhizosphere	MAHGDAFSETFIESLRRDISRWKSELSMLDEGQPEGGRGRLTSELRSWLEAGEAVFKRYEDRRA
Ga0207671_103479932	3300025914	Corn Rhizosphere	VAHGDAFSETFIEGLRRDLARWRTELKMLDVDQVPRGLFFQTSELRAWIDAGENILARYEEHRG
Ga0207649_103014133	3300025920	Corn Rhizosphere	MARDSDAFSSTFIEGLRRDLARWKTELATLDVGEESRGEYLQTSELRAWIEAGEAIFARYESRRA
Ga0207649_104376522	3300025920	Corn Rhizosphere	MAHGDAFSDTFIEGLRRDISRWKAEISMLDEGQPGNGKRLLTSELRAWIEAGEAVFVRYENRRG
Ga0207652_110497751	3300025921	Corn Rhizosphere	MARYSDAFSDTFIEGLRRDLERWKAELALLDVGEESRGLYLQTSELRTWIEAGEAIFARYERRRA
Ga0207694_100197874	3300025924	Corn Rhizosphere	MSRGDAFSETFIAGLRRDISRWKAELSMLDAGQEGSGSSLLTSELRSWIESGEAVFARYEKRRK
Ga0207694_113528431	3300025924	Corn Rhizosphere	MTRGDAFGETFIAGLRRDISRWKAELSMLDAGQEGSGSRLLTSELRSWIEAGEAVFARYEKRRK
Ga0207650_102231912	3300025925	Switchgrass Rhizosphere	LMMAHGDAFSDTFIEGLRRDISRWKAELSMLDEGQPGNGKRLLTSELRAWIEAGEAVFVRYENRRG
Ga0207659_106565604	3300025926	Miscanthus Rhizosphere	MAQGDAFSDTFIEGLRRDLARWKSELAMLDIGEESRGEYLQTSELRAWIDAGEAIFARYERRRV
Ga0207659_107324352	3300025926	Miscanthus Rhizosphere	MMAHGDAFSDTFIEGLRRDISRWKAELSMLDEGQPGNGKRLLTSELRAWIEAGEAVFVRYENRRG
Ga0207670_119358442	3300025936	Switchgrass Rhizosphere	MTQDSDAFSDTFIEGLRRDTARWKAELSLLDVGAERRGPYLQTSELRSWIEAGEKIFAKYERRRA
Ga0207667_103032672	3300025949	Corn Rhizosphere	MARNTDAFSNTFIEDLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYESRRA
Ga0207667_110366683	3300025949	Corn Rhizosphere	MARDSDSFSRTFIEGLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYEARRA
Ga0207639_109186663	3300026041	Corn Rhizosphere	MARSNDNFSDTFIEGLRRDLARWKTELAMLDVGEEIRGQFLQTSELRAWIEAGDAIFARYERRRA
Ga0207639_115714121	3300026041	Corn Rhizosphere	MAHGDAFSETFIEGLRRDISRWKAELSMLDRGQDRGGTDLLTYELRSWIEAGEAVFARYEKRRT
Ga0207702_101501554	3300026078	Corn Rhizosphere	MSQTATRFIEGLRRDIARWKVDLASLDVGQEAQAEYLQTSEIRAWIERIEGIIDRYESRHAQV
Ga0207641_110442481	3300026088	Switchgrass Rhizosphere	PGPGRRLPLAEFISPPMARNSDAFSEAFLEGLRRDTARWKAELSLLDADAEASGPRQETAELKSWIEAGEAIFARYENRRT
Ga0207683_119358881	3300026121	Miscanthus Rhizosphere	MAQGDAFSDTFIEGLRRDLARWKSELAMLDIGEESRGEYLQTSELRAWIDAGEAIFARYE
Ga0207698_108380701	3300026142	Corn Rhizosphere	MARDSDSFSRTFIEGLRRDLARWRTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYEARRA
Ga0268266_100524671	3300028379	Switchgrass Rhizosphere	MARNSDAFSETFLEGLRRDTARWKSELSLLDADAESGRRRSETSELRSWIEAGEAIFARYENRRA
Ga0265338_100055027	3300028800	Rhizosphere	MARSNDTFSNTFIEGLRRNLARWKTELAMLDVGEEVRGQFLQTSEVRAWIEADEAIFARYERRRA
Ga0265330_100766581	3300031235	Rhizosphere	MARSNDTFSNTFIEGLRRNLARWKTELAMLDVGEEVRGQFLQTSEVRAWIEADEAIFA
Ga0265331_100272227	3300031250	Rhizosphere	GWDMARSNDTFSNTFIEGLRRNLARWKTELAMLDVGEEVRGQFLQTSELRAWIEADEAIFARYERRRA
Ga0265314_100367876	3300031711	Rhizosphere	MARSNDTFSNTFIEGLRRNLARWKTELAMLDVGEEVRGQFLQTSELRAWIEADEAIFARYERRRA
Ga0335069_107163882	3300032893	Soil	DNFSNTFIEGLRRDLARWKTELAMLDVGEEVRGQYLQTSELRAWIEAGEAIFARYERRRA
Ga0310811_100329933	3300033475	Soil	MARENDKFSNTFIEGLRRDLLRWKTELAMLDVGEETRGQFLQTSEIRGWIEAGEAIFARYESRRA
Ga0310811_100511287	3300033475	Soil	MARNTDAFSDTFIEGLRRDLARWKTELAMLDVGEESRGEFLQTSELRAWIEAGEAIFARYEARRA
Ga0310811_101511762	3300033475	Soil	MARDSDAFSSTFIEGLRRDLARWKTELAMLDVGEESRGEYLQTSELRAWIEAGEAIFARYEARRA
Ga0310811_101735747	3300033475	Soil	MHQTTADFVAGLRRDIARWKVELAGLDMGEEAEREYLQTSELRQWIESGEAILARYETRR
Ga0310811_103198932	3300033475	Soil	MGQTTAAFIENLRRDIARWKADLAGLDVGQEAQGEYLQTSEIRAWIEAGESILARYESRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099471

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences