NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307285_10129508

Scaffold Ga0307285_10129508


Overview

Basic Information
Taxon OID3300028712 Open in IMG/M
Scaffold IDGa0307285_10129508 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)682
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096772Metagenome / Metatranscriptome104Y
F103632Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307285_101295081F096772GGAGMTRLLFTTLLCALGTVQAFAQSEVSQHWLELDDDERNAAFTLMLRDSNRKCDQVTRTLYNGSVLGVDDWEAKCRDRNS
Ga0307285_101295082F103632GAGGMSGKRLEVTVSYDAERGYVASAPELRQPVTALSLGDLRRRIEALMLPDDPVI

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