Scaffold Ga0307285

Basic Information
Taxon OID	3300028712 Open in IMG/M
Scaffold ID	Ga0307285_10000004 Open in IMG/M
Source Dataset Name	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028712 Open in IMG/M

Scaffold ID

Ga0307285_10000004 Open in IMG/M

Source Dataset Name

Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	246966
Total Scaffold Genes	269 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	181 (67.29%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

246966

Total Scaffold Genes

269 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

181 (67.29%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Colorado

Coordinates

Lat. (^o)

38.9206

Long. (^o)

-106.9489

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003627	Metagenome / Metatranscriptome	476	Y
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F049823	Metagenome	146	Y
F056088	Metagenome / Metatranscriptome	138	Y
F064160	Metagenome / Metatranscriptome	129	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307285_10000004111	F049823	AGGA	VPSQPVQGAYEVADGVVPEEKIDDALRLLHLDLLQRGAAAEELSQWLWGAHWFPHLNERPEILALAESLPQEWRTGRICDPQILLQFPHAGPEPEITFHLDQEPAWAEGRTYLRIVGVPLSSWRGDNGGLLVETAEGPAPVEADPGDAIMMTPDLPHSGGINRSGKLRYGVYFRFLADD
Ga0307285_10000004183	F081191	GGAGG	VTAIVALADDGFCRRSELARSFPRLESRDLRRALRRAVAQGLVIERRGPDGAFHLAVSSEGWNRHRNG
Ga0307285_10000004186	F016854	GAG	MAGSRLKTLPKPGEVWLSCPPYLMMARIVAVDLDGESPVVSYELHDDDGSLLQAVEHAALDRGWWRTFQRLEPRFG
Ga0307285_1000000420	F056088	AGG	MRLNEAAVFKWVVIVGIAGAVVVAVTLLTRPLVGSLLGLAIVIAGGVYAYRWARERWG
Ga0307285_10000004215	F031439	AGG	MYMIPIVLIILLALIAVAWSPIFALIFFAIGFIGFLAYAGLSRRSDEKLAPPEQPGRQPQHEAQGDTGMWGERKPS
Ga0307285_1000000427	F003627	N/A	MDRENARRQMRAGLVAGGIAAGIFALSFVAAFLYIAQ
Ga0307285_1000000473	F064160	N/A	LQDYAGVKLLLVPLAILAFVLFLLLLGAIGLAISFAVLYVFGRAWRLVSGGPRRDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307285_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences