NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1008400

Scaffold Ga0247723_1008400


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1008400 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4269
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003863Metagenome464Y
F017972Metagenome237Y
F037113Metagenome / Metatranscriptome168Y
F086805Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100840010F017972GGAGGVKTKHLQLVSSEHSDTTSSRESVRSHFGPVNPASTTLLAQETLRANQLAQLSELLSSLESVVESLNYKSFTLYDTLNTAIEAVSVALSDTQTELVGTKNC
Ga0247723_10084002F086805N/AMRELSKRGNLVIGIAIGLLIAVIYYLSGHLWWTGEEWCLDTMANCMDKAFTR
Ga0247723_10084006F037113GGAGMSKWTVWVGSSEINWQHYTHKIDAERVAEFWREVKGYDDVIVEEVA
Ga0247723_10084007F000821GAGGMNREYLEAKFDLCINEAEKDLQQEEIARAIANLRRANSALSQLFGFESEEESE
Ga0247723_10084008F001477GAGGVSNVYTIHPKKSELILFYEVLTPEGENEWGGASAEHCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0247723_10084009F003863GGAGGMESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINTDSRLTVGIHTRANTPPPFGDPADAGADEGYDGGEA
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