Scaffold Ga0247723_1002291

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1002291
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10322
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F040623	Metagenome / Metatranscriptome	161	Y
F087194	Metagenome / Metatranscriptome	110	Y
F099300	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100229111	F000447	GAG	MGYIEIFRIDNEGAGWIDLSKATDQELLDLEIGLFQEGAI
Ga0247723_100229112	F099300	AGG	MGVMKELHLDITTCDLCYGTGWLYFGNEIDFDTESCDCNPHQLFITKENN
Ga0247723_100229119	F000684	AGG	MTLNGYTYQIGDLFTTSKTGITGRISDFSPVNAKLTRVSLRLANGAHRFAMVKTSK
Ga0247723_100229127	F040623	GAGG	MKVRISLEQTIDIDDAMSNDIGFELYGPPDMSTEDKVDYLMARFAEDIDTMVKYDEVLGNISVEYI
Ga0247723_10022913	F087194	AGG	MNLDEYKQMVEAQRLASLGKGLEALMKSKAIQEKMKEENK