Scaffold Ga0247723_1000641

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000641
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23057
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F013184	Metagenome / Metatranscriptome	273	Y
F020168	Metagenome / Metatranscriptome	225	Y
F054797	Metagenome	139	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100064139	F063705	GGA	MKLHLISLRQDWEDTLNRMPLKDDEYDPSDAYFEGAIAATEHLLSVATDIMNNSNERVN
Ga0247723_100064141	F013184	GAG	MRITLKYYNFVIKLAGSVYARNEEEANEKINLHLDDLGQVESAKFDLNWPDVSWDLEYEL
Ga0247723_100064156	F002245	N/A	MKVPHTVVFEAIIDLDKIPASLLPRLIALDEKSIQEMCKGATLHALAESKVLQIANENNSWAEVTIKEGN
Ga0247723_100064157	F020168	N/A	MIGSVIAIILIGFLCSPILLVVYMWRGAKIDIDNDGKDDVPYRWEKQ
Ga0247723_100064160	F054797	N/A	ASNKTHPALFSKIVNDFAEMFAKDNERFDVKRFHEASGYNVPNFTSR