Scaffold Ga0247723_1000358

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000358
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31485
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (76.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020909	Metagenome	221	Y
F021112	Metagenome	220	Y
F047674	Metagenome / Metatranscriptome	149	Y
F055550	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10003581	F055550	N/A	VANCVTKQSSRGVMVAKASSRRKVDAAVASIFGYDRATQPLEPLPPVTRFFSIQV
Ga0247723_100035832	F020909	AGGA	MITKRGKRVRAIAILIGAILIWQIATNLWWVGTSPNAEFLGWCWGSMTECEVLG
Ga0247723_100035854	F021112	N/A	MATELLAILHSWESMIRSARQLTPPALLKREPTIDAEVQATCDFHLAHLEWTLGQEWVGDFFNEVKELHSKGMAAAKRFIEQPRRIPCPSDDCRKFVVIDVVAVSDNGLTNEVSCYGCKQSWSVLRLVTLAMSNPTRRFFLDVEAIALWLGLTQRQVYKIIKANNIANKGQLYDLAGVIKAR
Ga0247723_100035855	F047674	GGA	MDTETIKEIDEALAFAVSTRANTIDSKKHIVDKFIDDLLDSRLELTKC