Scaffold Ga0209298_10013997

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10013997
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4165
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008073	Metagenome	339	Y
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F044503	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100139972	F024318	N/A	MRNYLYLGKFIQRPGDLAPKGVASTYNEEKLPFNETFKRLWNLMK
Ga0209298_100139973	F030017	N/A	MELDEVTQKIKALYLEGLTRKKIAKTLGLDDQKVGYLLYTKMKLHELYPRKLMDENIFQILTDHQISRILTLATYGYDCREIAEDQNLEFRKVKKLLDVAQAKNMIEKKV
Ga0209298_100139977	F044503	AGAAG	MRGRNLTEYEKNLIFEAWQDRKQIKVIAQEMGLSYGCIYFQLKRRSLVG
Ga0209298_100139979	F008073	N/A	MDEIILTHLRKMEFVCGLKQFKEYKKEEANELLGCLSKLFGSYGWMSEDRVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKENEPSNEEIAYWIEVGKQTFRDNYQEAKETGNCKHLADWGIYWFNNFQEKGILKPWDFNVQEIESDVRKELRLTTRYVEESTVGAKTKNKIWKLFILQAIKDNKNLDQLI