Scaffold Ga0209298_10000721

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000721
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21990
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (71.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014142	Metagenome / Metatranscriptome	265	Y
F024789	Metagenome / Metatranscriptome	204	Y
F026557	Metagenome / Metatranscriptome	197	Y
F070104	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000072111	F026557	AGG	MINSVMTFPCDECNSTGLIFWGNDLDYDVETCVCDFGMEQDLNLFNTPEAN
Ga0209298_100007213	F014142	AGG	MNTLNTISIVVEPTHPMSSSNTKNNNIFRLSNGNYISRMAYVYMVASENLISHKYLSPNESKWVFANKVGK
Ga0209298_1000072132	F070104	GGAGG	MLGYTETDIAVMTDAMEDAIKSGRLSSEVVDGLEKAQSFFDGLWAEGYFD
Ga0209298_1000072156	F024789	GAG	MSGVQMPKDPKIMTMDWRSLGYWPVYKNGKKVWVPQDEQHNKD