Scaffold Ga0209400_1001021

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1001021
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23804
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (77.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009531	Metagenome / Metatranscriptome	316	Y
F021757	Metagenome	217	Y
F026557	Metagenome / Metatranscriptome	197	Y
F034575	Metagenome / Metatranscriptome	174	N
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100102134	F026557	AGG	MINSVLSIPCEECHSTGLIFWGNDLDYDVETCVCDFGMEQDLNLFNTPEAN
Ga0209400_100102136	F021757	AGGTGG	MTRKDYVATAEILSSFKDLIGDEFTFHDLVDEFASMFEADNERFDSQKFFEACNKNNY
Ga0209400_100102148	F009531	N/A	MTQQVAIYEMNYSCSPGGVDCWEATIQGYGTSTTASDFKTAGEALNWVIDRHPDEVLELVVTSLPAYEKEYV
Ga0209400_100102155	F034575	N/A	MKQVEMGMDGADILHGHLKTLMYEAEQVLDRCIEAEEYSEEAMDSMARTEATGYLDALSEVYALTYAIAFAKEDVKNRKEILGG
Ga0209400_100102164	F066789	GAG	MTHVCNYELDLDGQVTCTVCGAMDDDMSHSDDVDIFESQIDFE