Scaffold Ga0209404_10001407

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10001407
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16204
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (91.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090259	Metagenome	108	Y
F099989	Metagenome	103	Y
F105146	Metagenome	100	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1000140717	F106118	GGA	MKIGDLVRCLTVEGKPVGLVVEKFVFEAKPTNETDIFYVLIPRYEDPFPIRTSQVEVINESR
Ga0209404_100014072	F090259	GGAGG	MKIGELYEIQHKWMLPYSASKFWLDCGPILYLGEDVIDREDGVRIVNHAVLVKGQRRILDGSFLKFLEPLTKT
Ga0209404_100014073	F099989	AGG	MKIGDLVRIKDAGTVALVVRVIDGDHPWIYLHTGGCFWAEKLEVINENR
Ga0209404_100014079	F105146	GGAGG	VKVGDLVKSKYTVEGHRARFGLVMQLRDGAFENQPLAQVYWPHSSTFGWVEAIDMEIVDEGR