Scaffold Ga0209550_10126007

Overview

Basic Information

• Taxon OID: 3300027892
• Scaffold ID: Ga0209550_10126007
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1867
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006744	Metagenome / Metatranscriptome	365	Y
F014142	Metagenome / Metatranscriptome	265	Y
F024319	Metagenome / Metatranscriptome	206	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209550_101260071	F006744	AGGAG	MNLEEFKKHVIAQREASKAEALSVLSATITKTNEGENLNG
Ga0209550_101260074	F085708	GGAG	MNRLLTTIVQLSIAIPALYMVRLMWHDLKQDVREVIKDFR
Ga0209550_101260076	F024319	AGTAGG	MTNRIWESRNDYMTNSDYVACSSGCGRVTAWTLCVMCGGDYATHALVNVR
Ga0209550_101260077	F014142	AGGAG	MNSTNISVVVEPTHPMSSSNTKDNNIFRLANGNYISRMAYVYMVASENLISHRYLSPNESKWVFSQKVGN