Scaffold Ga0209465_10003045

Overview

Basic Information

• Taxon OID: 3300027874
• Scaffold ID: Ga0209465_10003045
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7291
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053711	Metagenome	140	Y
F059390	Metagenome / Metatranscriptome	134	Y
F077695	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209465_1000304514	F059390	AGGAGG	MHVATVGTYPVTIGWLIALLVLILAILGLVGVLPMSQTVIFGLIAALAVARLT
Ga0209465_1000304516	F077695	GGCGG	MTDYNIGTGVAQAIADNGDEARSDERYIIMDEGHKVSLTFGRDAQYFWLEEDNRVNRVPF
Ga0209465_100030457	F053711	GGA	MNGRVQTQDVEGIVQSVNATGLKLGGAWLNVSQFHPVELPDTGTHVRLQVDAKGYIKSLEVMGEAERKSAGVERDERITRLAVLKAAAEFVGLWGQTREEIKSDHVLLLADRWLEWVNR