NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209465_10003045

Scaffold Ga0209465_10003045


Overview

Basic Information
Taxon OID3300027874 Open in IMG/M
Scaffold IDGa0209465_10003045 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7291
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053711Metagenome140Y
F059390Metagenome / Metatranscriptome134Y
F077695Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209465_1000304514F059390AGGAGGMHVATVGTYPVTIGWLIALLVLILAILGLVGVLPMSQTVIFGLIAALAVARLT
Ga0209465_1000304516F077695GGCGGMTDYNIGTGVAQAIADNGDEARSDERYIIMDEGHKVSLTFGRDAQYFWLEEDNRVNRVPF
Ga0209465_100030457F053711GGAMNGRVQTQDVEGIVQSVNATGLKLGGAWLNVSQFHPVELPDTGTHVRLQVDAKGYIKSLEVMGEAERKSAGVERDERITRLAVLKAAAEFVGLWGQTREEIKSDHVLLLADRWLEWVNR

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