Scaffold Ga0209814_10164990

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209814_10164990

Scaffold Ga0209814_10164990

Overview

Basic Information
Taxon OID	3300027873 Open in IMG/M
Scaffold ID	Ga0209814_10164990 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	952
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8443	Long. (^o)	-83.9607	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045593	Metagenome / Metatranscriptome	152	Y
F050205	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209814_101649901	F050205	AGGAGG	VVADVAKLSVGREEYYTRELATDHEAYLSGHGESPGQWYGAGADSLG
Ga0209814_101649903	F045593	N/A	TMAMTLLGYRATMGELRREDLRREAAAARKVRAARATRRQRGV

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