Scaffold Ga0209579_10000004

Overview

Basic Information

• Taxon OID: 3300027869
• Scaffold ID: Ga0209579_10000004
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 890648
• Total Scaffold Genes: 980
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 657 (67.04%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003606	Metagenome / Metatranscriptome	477	Y
F005991	Metagenome / Metatranscriptome	384	Y
F006152	Metagenome / Metatranscriptome	380	Y
F009499	Metagenome / Metatranscriptome	317	Y
F010182	Metagenome / Metatranscriptome	307	Y
F015635	Metagenome / Metatranscriptome	253	Y
F041385	Metagenome / Metatranscriptome	160	Y
F052789	Metagenome / Metatranscriptome	142	Y
F064123	Metagenome / Metatranscriptome	129	Y
F064962	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_10000004219	F009499	GGA	MRDDDRPPICPRCGVTMVPAALSAGGRHEGDWVCLECEERNEDED
Ga0209579_10000004241	F041385	AGGAGG	VRISTLVVVVGLIAAATAAIAMAAAGLPNLGPAKMTSEPVYKGYYDHHLDTYVLTDVSSKAQATAMHINFSAAIGKVKGLPLQYFVKGRAAAGQVAVFGSEPGESDYNPLWEEIWVTWKPGVKPVLLYRDDQINSLQSKGKLTETDAHIVLNAPILTVGK
Ga0209579_10000004300	F006152	N/A	MAERRPTNSELRLKRLTAQEPDREQRGILELFDDGGEELSDEDAPLARETDEHDG
Ga0209579_10000004383	F064123	AGGAGG	MARKTVFVSDLSGKEISNERDAVTITVKFGDARRGQYSVDAHPDDAEVKRLISAGTQQARRGRRPKAASS
Ga0209579_10000004408	F010182	AGGAG	MDVIGTDFLAGSILSLVLPVGLLVAVGIWWLTILRRRDRDV
Ga0209579_10000004464	F015635	GGA	VSQSTPLAGGATLLFSPRMQGTRGSSFQPVEAGAVLAGTVGMCGGAGALAGWAAGNAGYGALAGIVVGIPAGVYAVYHRFKGYFS
Ga0209579_10000004607	F003606	N/A	VRPRSANEWRDFWRDGGERDLHAQLGEFAPYSVRLATLLGSNAPLRALVAELGRIREHELRTPPDPDADAELAARIYAWFESASRAR
Ga0209579_10000004721	F064962	AGGAGG	MRRRTVLLAVAALGAALAAGGALSATTSVTITTPKAGQKVSLHQNPYLAVAGKVTFADTSAGTTRFFLRRDGCGTSADNPHLSLTAGNPDAGDGCGLIVDQVGLVGDAAPEAAFTDYPAVDGMPLAFDGTKPITGQVSLSGAQVGVAEVTVDVQALVGGSAVDLGSTTATAVLDPTGASTPVPFSIPAEPSLDGSDVQALDLRVTIHGPNVYSGFTALSGASYMDVPSYAASVNKTVLVSVDDSSFANAVPARLSGSTWSVAVPTPAVGKHTLYAESTQGYTTSAPTSLTFTVTK
Ga0209579_10000004766	F052789	AGG	VSTALGLLAFAAYALVVIGAAAAITWMVVKLTPPGRRPGS
Ga0209579_10000004836	F005991	GAGG	MRSYGMYDMTRGLTLALFAGLVGVALWGAAQVGTQTSSRFWIAMAIVAAAGLLLTLANHVGTWTKGLRMRTSPGTFVLAFLPVLVCVGWILMASQPGHGWQEGRIDSWSSSIGILGLVHSVGLWRGVLAFGFGVMLGLSLDGVPEPMVAPDTPAYAPIPTRTEGTATADEPVTAERRWAVRRRESGTPAGTTRVPERTRND