Basic Information | |
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Taxon OID | 3300027842 Open in IMG/M |
Scaffold ID | Ga0209580_10000003 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 892418 |
Total Scaffold Genes | 829 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 640 (77.20%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019189 | Metagenome / Metatranscriptome | 231 | Y |
F022512 | Metagenome / Metatranscriptome | 214 | Y |
F038796 | Metagenome / Metatranscriptome | 165 | Y |
F040778 | Metagenome / Metatranscriptome | 161 | N |
F087498 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209580_10000003561 | F019189 | GGAG | MKSLNTKLVLSALGIALLATPAFAAKHHQASYQGLQNSAARAPAPTTDVGTYPNGATRSGSAYSRESGAEDNVIR |
Ga0209580_10000003649 | F040778 | GGAG | MSETVDIQMKRKTARDSSKDKRVLDQIEKWMEMIREISREPVKN |
Ga0209580_10000003716 | F022512 | GGAG | MTPQAANNKQRLITIYVLIALGFAGLIGAHEISGPDENADLTLPFILAGAGTLCFVAAGLMARRLMKGGGLR |
Ga0209580_10000003717 | F038796 | GGAG | MVDKITAQRDVEYITELLAKETDENRRVILQRLLADAEKLRQSEDPEENSNKKTAAGQADSKDD |
Ga0209580_10000003730 | F087498 | AGGAG | MPNVTKIALAAAIVLSTAVAASAATQNHRIVRSHAATYNTAPPIISDACQPVGPPCRTHPDSW |
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