Metagenome / Metatranscriptome Family F087498

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087498
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	60 residues
Representative Sequence	MPSMTKLALAAAIVLSTTLTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDGW
Number of Associated Samples	73
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.73 %
% of genes near scaffold ends (potentially truncated)	23.64 %
% of genes from short scaffolds (< 2000 bps)	76.36 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.818 % of family members)
Environment Ontology (ENVO)	Unclassified (38.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (83.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.58% β-sheet: 0.00% Coil/Unstructured: 67.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00857	Isochorismatase	17.27
PF01243	Putative_PNPOx	17.27
PF01977	UbiD	8.18
PF00795	CN_hydrolase	3.64
PF04191	PEMT	3.64
PF11391	DUF2798	3.64
PF13531	SBP_bac_11	1.82
PF02515	CoA_transf_3	0.91
PF13193	AMP-binding_C	0.91
PF08240	ADH_N	0.91
PF04444	Dioxygenase_N	0.91
PF00296	Bac_luciferase	0.91
PF10049	DUF2283	0.91
PF02371	Transposase_20	0.91
PF07045	DUF1330	0.91
PF01636	APH	0.91
PF06100	MCRA	0.91
PF00501	AMP-binding	0.91
PF03401	TctC	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	17.27
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	17.27
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	8.18
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.91
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.91
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.91
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91
COG4716	Myosin-crossreactive antigen (function unknown)	Function unknown [S]	0.91
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.00 %
Unclassified	root	N/A	28.18 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.36 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.82 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.55 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.91 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.91 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Bradyrhizobium frederickii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	0.91 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Bradyrhizobium sp. STM 3843	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.91 %
Bradyrhizobium frederickii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10006977	All Organisms → cellular organisms → Bacteria	7836	Open in IMG/M
3300002245\|JGIcombinedJ26739_101750944	Not Available	521	Open in IMG/M
3300003505\|JGIcombinedJ51221_10016177	All Organisms → cellular organisms → Bacteria → Proteobacteria	2543	Open in IMG/M
3300004092\|Ga0062389_103168271	Not Available	616	Open in IMG/M
3300005436\|Ga0070713_101710070	Not Available	611	Open in IMG/M
3300005542\|Ga0070732_10000029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	160785	Open in IMG/M
3300005542\|Ga0070732_10478396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300005602\|Ga0070762_10070949	Not Available	1961	Open in IMG/M
3300005602\|Ga0070762_10898646	Not Available	603	Open in IMG/M
3300005602\|Ga0070762_11215935	Not Available	521	Open in IMG/M
3300005610\|Ga0070763_10053591	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300005921\|Ga0070766_10045690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2443	Open in IMG/M
3300005921\|Ga0070766_10704480	Not Available	684	Open in IMG/M
3300005921\|Ga0070766_10786780	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300005995\|Ga0066790_10141365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1031	Open in IMG/M
3300006028\|Ga0070717_12164610	Not Available	500	Open in IMG/M
3300006176\|Ga0070765_100454409	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300006176\|Ga0070765_100513306	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300006176\|Ga0070765_100545523	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300006176\|Ga0070765_101026559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300006176\|Ga0070765_101184689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300006176\|Ga0070765_101500205	Not Available	635	Open in IMG/M
3300009520\|Ga0116214_1043667	All Organisms → cellular organisms → Bacteria	1623	Open in IMG/M
3300009522\|Ga0116218_1486673	Not Available	550	Open in IMG/M
3300009523\|Ga0116221_1004781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8524	Open in IMG/M
3300009525\|Ga0116220_10171581	Not Available	935	Open in IMG/M
3300009698\|Ga0116216_10630636	Not Available	645	Open in IMG/M
3300009700\|Ga0116217_10108786	All Organisms → cellular organisms → Bacteria	1889	Open in IMG/M
3300009824\|Ga0116219_10557900	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	631	Open in IMG/M
3300009839\|Ga0116223_10079414	All Organisms → cellular organisms → Bacteria	2098	Open in IMG/M
3300009839\|Ga0116223_10191211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	1254	Open in IMG/M
3300010379\|Ga0136449_101096366	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300010379\|Ga0136449_101515083	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300011120\|Ga0150983_16668191	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300013832\|Ga0120132_1122284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	559	Open in IMG/M
3300014165\|Ga0181523_10492929	Not Available	677	Open in IMG/M
3300014199\|Ga0181535_10682733	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300014200\|Ga0181526_10758110	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300014200\|Ga0181526_10891853	Not Available	559	Open in IMG/M
3300014489\|Ga0182018_10013970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5566	Open in IMG/M
3300014489\|Ga0182018_10071279	All Organisms → cellular organisms → Bacteria	2076	Open in IMG/M
3300014489\|Ga0182018_10685523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300014501\|Ga0182024_10040391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	7693	Open in IMG/M
3300014501\|Ga0182024_10056625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	6117	Open in IMG/M
3300018006\|Ga0187804_10018184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2524	Open in IMG/M
3300020021\|Ga0193726_1000010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	706918	Open in IMG/M
3300020580\|Ga0210403_10093832	All Organisms → cellular organisms → Bacteria	2430	Open in IMG/M
3300020582\|Ga0210395_10084492	All Organisms → cellular organisms → Bacteria → Proteobacteria	2340	Open in IMG/M
3300020583\|Ga0210401_10306132	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300020583\|Ga0210401_10995320	Not Available	697	Open in IMG/M
3300020583\|Ga0210401_11131843	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300021171\|Ga0210405_10247045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	1412	Open in IMG/M
3300021171\|Ga0210405_11103973	Not Available	593	Open in IMG/M
3300021180\|Ga0210396_10197399	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300021180\|Ga0210396_11040001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300021181\|Ga0210388_10286507	Not Available	1447	Open in IMG/M
3300021403\|Ga0210397_10373589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1061	Open in IMG/M
3300021403\|Ga0210397_10720098	Not Available	768	Open in IMG/M
3300021405\|Ga0210387_10314352	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300021405\|Ga0210387_10783443	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300021407\|Ga0210383_10294930	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300021407\|Ga0210383_10526418	Not Available	1020	Open in IMG/M
3300021420\|Ga0210394_10029688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4931	Open in IMG/M
3300021420\|Ga0210394_10449189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1134	Open in IMG/M
3300021474\|Ga0210390_10294989	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300021474\|Ga0210390_10465418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	1066	Open in IMG/M
3300021477\|Ga0210398_10003581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	14832	Open in IMG/M
3300021477\|Ga0210398_10020756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5607	Open in IMG/M
3300021478\|Ga0210402_11054990	Not Available	740	Open in IMG/M
3300021479\|Ga0210410_10438783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1168	Open in IMG/M
3300022557\|Ga0212123_10398733	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300024225\|Ga0224572_1058182	Not Available	717	Open in IMG/M
3300025320\|Ga0209171_10208082	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300025509\|Ga0208848_1028578	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300027370\|Ga0209010_1005977	All Organisms → cellular organisms → Bacteria → Proteobacteria	2441	Open in IMG/M
3300027528\|Ga0208985_1035119	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300027568\|Ga0208042_1008585	All Organisms → cellular organisms → Bacteria	2748	Open in IMG/M
3300027583\|Ga0209527_1030466	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300027605\|Ga0209329_1054687	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300027635\|Ga0209625_1007760	All Organisms → cellular organisms → Bacteria	2329	Open in IMG/M
3300027641\|Ga0208827_1040722	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300027648\|Ga0209420_1052604	All Organisms → cellular organisms → Bacteria → Proteobacteria	1220	Open in IMG/M
3300027684\|Ga0209626_1030370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	1317	Open in IMG/M
3300027684\|Ga0209626_1033793	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300027842\|Ga0209580_10000003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	892418	Open in IMG/M
3300027854\|Ga0209517_10640902	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300027855\|Ga0209693_10111662	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300027884\|Ga0209275_10602120	Not Available	631	Open in IMG/M
3300027889\|Ga0209380_10024459	All Organisms → cellular organisms → Bacteria	3408	Open in IMG/M
3300028023\|Ga0265357_1003378	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300028047\|Ga0209526_10226702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1286	Open in IMG/M
3300028906\|Ga0308309_10213673	Not Available	1596	Open in IMG/M
3300028906\|Ga0308309_10666167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	904	Open in IMG/M
3300028906\|Ga0308309_11315703	Not Available	621	Open in IMG/M
3300030763\|Ga0265763_1021089	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300030862\|Ga0265753_1109404	Not Available	568	Open in IMG/M
3300031057\|Ga0170834_101344458	Not Available	587	Open in IMG/M
3300031446\|Ga0170820_13987327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300031708\|Ga0310686_108383775	Not Available	547	Open in IMG/M
3300031708\|Ga0310686_112595697	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300031708\|Ga0310686_115552424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2364	Open in IMG/M
3300031708\|Ga0310686_118653254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	2329	Open in IMG/M
3300031715\|Ga0307476_10881115	Not Available	661	Open in IMG/M
3300031715\|Ga0307476_11188119	Not Available	559	Open in IMG/M
3300031718\|Ga0307474_10223962	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300031718\|Ga0307474_11322787	Not Available	569	Open in IMG/M
3300032160\|Ga0311301_10192640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3522	Open in IMG/M
3300032160\|Ga0311301_10318445	All Organisms → cellular organisms → Bacteria	2470	Open in IMG/M
3300032160\|Ga0311301_10516887	All Organisms → cellular organisms → Bacteria	1762	Open in IMG/M
3300032160\|Ga0311301_12138630	Not Available	646	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	1.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.91%
Aquatic	Environmental → Aquatic	7.27%
Plants	Host-Associated → Plants	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.91%
Freshwater	Environmental → Aquatic → Freshwater	5.45%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.45%
Loam	Environmental → Terrestrial → Soil → Loam	30.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.45%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	28.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.36%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.55%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.82%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	17.27%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	17.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.73%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.73%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100069773	3300000567	Peatlands Soil	MPSMTKIALSAAIVLSATLTASAATDHRRVTHGHAAIYNAAPAIISDACQPVGPPCRTHPDGW*
JGIcombinedJ26739_1017509442	3300002245	Forest Soil	MPSMTKLALAAAIVLSTTLTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDGW*
JGIcombinedJ51221_100161772	3300003505	Forest Soil	MPSMTKIALAAAIVLSTTLAASAATDHRRVTGGHAVIYNAAPAIISDACQPVGPPCRTHPDGW*
Ga0062389_1031682711	3300004092	Bog Forest Soil	MSSMTKLALAAAIVLSATLTASAATEHRARGHAVTYNADPGIISDACQPVGPPCRTHPDGW*
Ga0070713_1017100702	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LAAAIVLFTAATASAATKAHRAVRVHPPIYNAAPPIINDACQPVGPPCRTHVDSA*
Ga0070732_1000002965	3300005542	Surface Soil	MPNVTKIALAAAIVLSTAVAASAATQNHRIVRSHAATYNTAPPIISDACQPVGPPCRTHPDSW*
Ga0070732_104783962	3300005542	Surface Soil	MPNVTKLALAAAIVLSTAVTASAATRTHRAVRVHPPIYNAAPPIINDACQP
Ga0070762_100709492	3300005602	Soil	MPSMTKFALAAAIVLSTTLTASAATEHRARGHAAPYYAAPPIISDACQPVGPPCRTHPDGW*
Ga0070762_108986462	3300005602	Soil	MPSMTKFALSAAIVLSTTLTAFAATEHRARGHAATYYAAPAIISDACQPVGPPCRTHPDGW*
Ga0070762_112159351	3300005602	Soil	AAAIVLSATLTASAATEHRARGHAPTYYAAPPIISDACQPVGPPCRTHPDGW*
Ga0070763_100535912	3300005610	Soil	VRLNLENKVSTMTKIALTAAIVLCTAVTASAATDHHRETRAHPPTYNVAPAIISDACQPVGPPCRTHPDGW*
Ga0070766_100456901	3300005921	Soil	MSSMTKLALAAAIVLSTAVTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDGW*
Ga0070766_107044802	3300005921	Soil	MPSMTKLALATAIVLSATLTASAATEHRRAHAATYNADPGIISDACQPVGPPCRTHPDGW
Ga0070766_107867802	3300005921	Soil	MPSMTKLALAAAIVLSATLTASAATEHRRAHAATYNADPGIISDACQPVGP
Ga0066790_101413652	3300005995	Soil	MQSMTKLTLAAAIVLSTALTASAATEHRRAHAATNNTDPGIISDACQPVGPPCRTHPDGW
Ga0070717_121646102	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MQSMTKLALVATFVLSATLTASAATEHRARGHAATYYNAAPPIISDACQPVGPPCRTHPDSW*
Ga0070765_1004544092	3300006176	Soil	MPSMTKIALAAAIVLSTTIVASAATEHRARGHAAIYNAAPAIISDACQPVGPPCRTHPDGW*
Ga0070765_1005133061	3300006176	Soil	SMTKIALAAAIVLSATLTASAATEHRARGQAATYNADPGIISDACQPVGPPCRTHPDGW*
Ga0070765_1005455231	3300006176	Soil	MRSMTKLALSAAIVLSATLTASAATDHHRAYSHPATYNAAPAIISDACQPVGPPCRTHPDGW*
Ga0070765_1010265591	3300006176	Soil	MPNMTKIALAAAFVLSTTLTASAATEHRARGHATTYNAAPAIISDACQPVGPPCRTHPDGW*
Ga0070765_1011846892	3300006176	Soil	MPSMTKIALSVAIVLSATLTASAATEHRARGHAATYNAAPAIISDACQPVGPPCRTHPDGW*
Ga0070765_1015002052	3300006176	Soil	MPSMTKIALAAAIVLSTAVTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDGW*
Ga0116214_10436673	3300009520	Peatlands Soil	MTKIALSAAIVLSATLTASAATDHRRVTHGHAAIYNAAPAIISDACQPVGPPCRTHPDGW
Ga0116218_14866731	3300009522	Peatlands Soil	KIALSAAIVLSATLTASAATDHRRVTRAHPAIYDAAPAIISDACQPVGPPCRTHPDGW*
Ga0116221_10047812	3300009523	Peatlands Soil	MPSMTKIALSAAIVLSATLTASAATDHRRVTRAHPAIYDAAPAIISDACQPVGPPCRTHPDGW*
Ga0116220_101715812	3300009525	Peatlands Soil	MPSMKKIALSAAIVLSATLTASAATDHRRVTRAHPAIYDAAPAIISDACQPVGPPCRTHPDGW*
Ga0116216_106306362	3300009698	Peatlands Soil	MPSMTKIALSAAIVLSTTLTASAATDHRRVSHGRAAIYNAAPAIISDECQPVGPPCRTHPDGW*
Ga0116217_101087863	3300009700	Peatlands Soil	MTKIALSAAIVLSTTLTASAATDHRRVSHGRAAIYNAAPAIISDECQPVGPPCRTHPDGW
Ga0116219_105579001	3300009824	Peatlands Soil	MPSMTKIAPSAASVLSTTLTASAATDHRRVSHGRAAIYNAAPAIISDECQP
Ga0116223_100794141	3300009839	Peatlands Soil	IALSAAIVLSATLTASAATDHRRVTHGHAAIYNAAPAIISDACQPVGPPCRTHPDGW*
Ga0116223_101912112	3300009839	Peatlands Soil	MKKIALSAAIVLSATLTASAATDHRRVTRAHPAIYDAAPAIISDACQPVGPPCRTHPDGW
Ga0136449_1010963662	3300010379	Peatlands Soil	MLSMTKIALSAAIVLSTTIAAPAATDHRARGHAATYNADPGVISDACQPVGPPCRTHPDGW*
Ga0136449_1015150832	3300010379	Peatlands Soil	MPSMTKLALAAAIVLSATLTASAATEHRARGHAATNNADPGIISDACQPVGPPCRTHPDGW*
Ga0150983_166681911	3300011120	Forest Soil	MTKLALSAAIVLSTAVTASAATDHRRTHGHPAIYDAAPAIISDACQPVGPPCRTHPDGW*
Ga0120132_11222842	3300013832	Permafrost	MPSMSKFALSAAIVLSATLTASAATEHRARGHATYNAAPAIISDACQPVGPPCRTHPDGW
Ga0181523_104929292	3300014165	Bog	AGHTAQPGETKMPSMTKLALAAAIILSTAVAASAATDHRRAHGHAAIYNSVPAIISDECLPVGPPCRTHPDGW*
Ga0181535_106827332	3300014199	Bog	MTKLALAAAIVLSTALTASAATEHRRAHAATYNADPGIISDACQPVGPPCR
Ga0181526_107581101	3300014200	Bog	KYALAAAIVFSTALTASAATEHRRAHAATYNTDPGIISDACQPVGPPCRTHPDGW*
Ga0181526_108918532	3300014200	Bog	MPSMTKLALAAAIILSTAVAASAATDHRRAHGHAAIYNSVPAIISDECLPVGPPCRTHPDGW*
Ga0182018_100139708	3300014489	Palsa	GRAGHRAQPGETKMPSMTKLALAAAIVLSTAITASAATEHRARGHAATNNADPGIISDACQPVGPPCRTHPDGW*
Ga0182018_100712792	3300014489	Palsa	MPSMTKIALAAAIVLSTAVAASAATDHHRAHAATYNADPGIISDACQPVGPPCRTHPDGW
Ga0182018_106855231	3300014489	Palsa	MAQPGATKMPSMTKFALAAVMILSATLTASAASDHRRAHGHPAIYNSAPAIVSDECQPVGPPCRTHPDGW*
Ga0182024_100403912	3300014501	Permafrost	MSSMTKLALSAAIVLSATLTASAATDHHRAYSHSATYNAAPAIISDACQPVGPPCRTHPDGW*
Ga0182024_100566255	3300014501	Permafrost	MTKIALAAAIVLSTAVAASAATDHHRAHAATYNADPGIISDACQPVGPPCRTHPDGW*
Ga0187804_100181843	3300018006	Freshwater Sediment	MLSMPKIALPAAIILSTTLTASAATDHRRAHPATYSTAPAIISDACQPVGPPCRTHPDGW
Ga0193726_100001040	3300020021	Soil	MPSIKIALAAAIVLSATLTASAATDHRRVTGGHAVIYNSAPAIISDACQPVGPPCRTHPDGW
Ga0210403_100938322	3300020580	Soil	MPSMTKIALAAAIVLSTTLAASAATDHRRVTGGHAVIYNAAPAIISDACQPVGPPCRTHPDGW
Ga0210395_100844923	3300020582	Soil	MPSMTKIALSAAIILSTTFSASAATDHRRAHGHAAIYNAAPAIISDECQPVGPPCRTHPDGW
Ga0210401_103061322	3300020583	Soil	MPSMTKFALSAAIVLSATLTASAATEHRARGHAATYYAAPPIISDACQPVGPPCRTHPDG
Ga0210401_109953202	3300020583	Soil	MPSTTKSALAAAIVLSATLTASAATEHRRAHAATYNADPGIISDACQPVGPPCRTHPDGW
Ga0210401_111318432	3300020583	Soil	MPSMTKFALSAAIVLSTTLTAFAATEHRARGHAATYYAAPAIISDACQPVGPPCRTHPDG
Ga0210405_102470453	3300021171	Soil	MPSMTKFALSAAIVLSTAVTASAATDHRRTHGHPAIYDAAPAIISDACQPVGPPCRTHPDGW
Ga0210405_111039732	3300021171	Soil	MPSMIKIALAAAIVLSTAVTASAATEHRRAHAATYNVDPGIISDACQPVGPPCRTHPDGW
Ga0210396_101973993	3300021180	Soil	MPSMTKLALSAVIVLSTAVTASAATDHRRAHGHPAIYDAAPAIISDACQPVGPPCRTHPDGW
Ga0210396_110400012	3300021180	Soil	MRSMTKLALSAAIVLGATLTASAATEHHRAYSHPATYNAAPAIISDACQPVGPPCRTHPDGW
Ga0210388_102865072	3300021181	Soil	MRSMTKLALSAAIVLSATLTASAATDHHRAYSHPATYNAAPAIISDACQPVGPPCRTHPDGW
Ga0210397_103735892	3300021403	Soil	MSSMTKIALAAAIVLSATLTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDG
Ga0210397_107200981	3300021403	Soil	MSSMTKLALSAAIVLSATLTASAATEHHRAYSHAATYNAAPAIISDACQPV
Ga0210387_103143522	3300021405	Soil	MSSMTKLALAAAIVLSATLTASAATEHHRAYSHPATYNAAPAIISDACQPVGPPCRTHPDGW
Ga0210387_107834432	3300021405	Soil	MRSMTKLALSAAIVLGATLTASAATDHHRAYSHPATYNAAPAIISDACQPVGPPCRTHPDGW
Ga0210383_102949301	3300021407	Soil	MTKLALSAAIVLGATLTASAATEHHRAYSHPATYNAAPAIISDACQPVGPPCRTHPDGW
Ga0210383_105264182	3300021407	Soil	MPSMTKIALAAAIILSTTLTASAATDHRRAHGHAAIYNSAPAIISDECQPVGPPCRTHPDGW
Ga0210394_100296885	3300021420	Soil	MPRMTKIAFSAAIVLSTTLTASAATDHRRAAHSHAIYDAAPAIISDACQPVGPPCRTHPDGW
Ga0210394_104491892	3300021420	Soil	MPSMTKIALAAAIVLSATLTASAATEHRHAHAPTYNTDPGIISDACQPVGPPCRTHPDGW
Ga0210390_102949892	3300021474	Soil	MPSMTKIALAAAIVLSTTLAASAATDHRRVTGGHAVIYNAAPAIISDACQPVGPPCRTHP
Ga0210390_104654181	3300021474	Soil	MPSMTKFALAAAIVLSATLTASAATDHRRVPHGRAAIYNAAPAIISDECQPVGPPCRTH
Ga0210398_100035816	3300021477	Soil	MPGMTKFALSAAIVLSTTLTASAATEHRARGHAATYYAAPAIISDACQPVGPPCRTHPDG
Ga0210398_100207563	3300021477	Soil	MPSMTKIALSAAIILSTTFSASAATDHRRGHGHAAIYNAAPAIISDECQPVGPPCRTHPDGW
Ga0210402_110549902	3300021478	Soil	MPSMTKLALAAAVVLSTALTASAATEHRRAHAPTYNTDPGIISDACQPVGPPWRTHPDGW
Ga0210410_104387833	3300021479	Soil	MPGMTKFALSAAIVLSTTLTASAATEHRARGHAATYYAAPPIISDACQPVGPPC
Ga0212123_103987331	3300022557	Iron-Sulfur Acid Spring	MTKIALAAAIVLSTAVTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDGW
Ga0224572_10581821	3300024225	Rhizosphere	MPSMTKIALAAAIVLSATFTASAATDHRRVTRAHPPIYNAAPAIISDECQPVGPPCRTHPDGW
Ga0209171_102080822	3300025320	Iron-Sulfur Acid Spring	MPSMTKIALAAAIVLSTAVTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDG
Ga0208848_10285782	3300025509	Arctic Peat Soil	MPSMTKFALAAAIVLSTALTASAATEHRRAHAPTYNTDPGIISDACQPVGPPCRTHPDGW
Ga0209010_10059772	3300027370	Forest Soil	MPSMTKLALATAIVLSATLTASAATDHRRVTHGHAAIYNTAPAIISDECQPVGPPCRTHPDGW
Ga0208985_10351192	3300027528	Forest Soil	MSSMTKLALSAAIVLSATLTASAATEHHRAYSHPATYNAAPAIISDACQPVGPPCRTHPDGW
Ga0208042_10085854	3300027568	Peatlands Soil	MPSMTKIALSAAIVLSATLTASAATDHRRVTHGHAAIYNAAPAIISDACQPVGPPCRTHPDGW
Ga0209527_10304662	3300027583	Forest Soil	MTKLALAAAIVLSTTLTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDGW
Ga0209329_10546872	3300027605	Forest Soil	MPSMTKFALAAAIVLSTAVTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDG
Ga0209625_10077602	3300027635	Forest Soil	MPSMTKLALAAAIVLSTTLTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDG
Ga0208827_10407223	3300027641	Peatlands Soil	MPSMTKIALSAAIVLSATLTASAATDHRRVTHGHAAIYNAAPAIISDACQPVGPPCRTHPDG
Ga0209420_10526042	3300027648	Forest Soil	MPSMTKIALSAAIVLSTTFSASAATDHRRAHAATYNADPGIISDACQPVGPPCRTHPDGW
Ga0209626_10303702	3300027684	Forest Soil	MPSMTKIALAAAIVLSTAVTASAATEHRRAHAPTYNTDPGIISDTCQPVGPPCRTHPDGW
Ga0209626_10337932	3300027684	Forest Soil	MPSMRKIALVAAIVLSATLTASAATEHHARGHAATYYAAPPIISDACQPVGPPCRTHPDG
Ga0209580_10000003730	3300027842	Surface Soil	MPNVTKIALAAAIVLSTAVAASAATQNHRIVRSHAATYNTAPPIISDACQPVGPPCRTHPDSW
Ga0209517_106409022	3300027854	Peatlands Soil	SMTKLALAAAIVLSATLTASAATEHRARGHAATNNADPGIISDACQPVGPPCRTHPDGW
Ga0209693_101116622	3300027855	Soil	MTKIALTAAIVLCTAVTASAATDHHRETRAHPPTYNVAPAIISDACQPVGPPCRTHPDGW
Ga0209275_106021201	3300027884	Soil	MPSMTKFALAAAIVLSTTLTASAATEHRARGHAAPYYAAPPIISDACQPVGPPCRTHPDG
Ga0209380_100244595	3300027889	Soil	VRLNLENKVSTMTKIALTAAIVLCTAVTASAATDHHRETRAHPPTYNVAPAIISDACQPVGPPCRTHPDGW
Ga0265357_10033783	3300028023	Rhizosphere	MPSMTKLALSAAIVLSTTLTASAATDHRRVSHGHAAIYNAAPAIISDECQPVGPPCRTHPDGW
Ga0209526_102267021	3300028047	Forest Soil	MPSMTKFALAAAIVLSTAVTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTH
Ga0308309_102136733	3300028906	Soil	MPSMTKIALAAAIVLSTTIVASAATEHRARGHAAIYNAAPAIISDACQPVGPPCRTHPDG
Ga0308309_106661672	3300028906	Soil	MPSMTKIALSVAIVLSATLTASAATEHRARGHAATYNAAPAIISDACQPVGPPCRTHPDG
Ga0308309_113157032	3300028906	Soil	TAQPGETKMPSMTKLALAAAIVLSATLTASAATEHRRAHAATYNADPGIISDACQPVGPPCRTHPDGW
Ga0265763_10210892	3300030763	Soil	FALSAAIVLSTTLTAVAATEHRARDHAATYYATPPIISDACQPVGPPCRTHPDGW
Ga0265753_11094041	3300030862	Soil	MPSMTKLALAAAIFLSTALPASAATEHHRAYSHPATYNAAPAIISDACQPVGPPCRTHPDGW
Ga0170834_1013444582	3300031057	Forest Soil	MPSMTKFALAAAIVLGATLTASAATEHRARGHAATYYAAPPIISDACQPVGPPCRTHPDG
Ga0170820_139873272	3300031446	Forest Soil	MPSRTKIALAAAIVLSTAVTASAATEHRARGHAATYNADPGIISDACQPVGPPCRTHPDG
Ga0310686_1083837752	3300031708	Soil	MPSMTKIALAAAIVLSTTFTASAATDHRRVTRAHPPIYNAAPAIISDECQPVGPPCRT
Ga0310686_1125956971	3300031708	Soil	MPSMTKIALAAAIVLSATFTASAATDHRRVTRAHPPIYNAAPAIISDECQPVGPPCRT
Ga0310686_1155524242	3300031708	Soil	MLSMTKIALSAAIVLSTTIAASAATDHRARGHAATYNADPGIISDACQPVGPPCRTHPDG
Ga0310686_1186532542	3300031708	Soil	MPSMTKFALSAAIVLSTAVTASAATDHRRAHGHPAIYDAAPAIISDACQPVGPPCRTHPDGW
Ga0307476_108811152	3300031715	Hardwood Forest Soil	MPSMTKIALAAAIVLSTTLAASAATDHRRVTSGHAVIYNAAPAIISDACQPVGPPCRTHPDGW
Ga0307476_111881191	3300031715	Hardwood Forest Soil	MPSMTKIALAAAIVLSATLTASAATEHRARGRAPTYYAAPPIISDACQPVGPPCRTHPDG
Ga0307474_102239621	3300031718	Hardwood Forest Soil	MPSMTRIAFAAAIVLSTTLTASAATEHRVRTHAATYNAAPAIISDACQPVGPPCRTHPDG
Ga0307474_113227871	3300031718	Hardwood Forest Soil	MPSMTKIALAAAIVLSTTIVASAATEHRARGHAATYNAAPAIISDACQPVGPPCRTHPDG
Ga0311301_101926404	3300032160	Peatlands Soil	MPSMKKIALSAAIVLSATLTASAATDHRRVTRAHPAIYDAAPAIISDACQPVGPPCRTHPDGW
Ga0311301_103184452	3300032160	Peatlands Soil	MPSMTKIALSAAIVLSTTLTASAATDHRRVSHGRAAIYNAAPAIISDECQPVGPPCRTHPDGW
Ga0311301_105168872	3300032160	Peatlands Soil	MLSMTKIALSAAIVLSTTIAAPAATDHRARGHAATYNTDPGIISDACQPVGPPCRTHPDG
Ga0311301_121386302	3300032160	Peatlands Soil	MPSMTKIALAAAIVLSTTFTASAATDHRRVTRAHPPIYNAAPAIISDECQPV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087498

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences