Scaffold Ga0209580_10000001

Overview

Basic Information

• Taxon OID: 3300027842
• Scaffold ID: Ga0209580_10000001
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1658941
• Total Scaffold Genes: 1640
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1331 (81.16%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Associated Families: 16

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002123	Metagenome / Metatranscriptome	591	Y
F015497	Metagenome / Metatranscriptome	254	Y
F018228	Metagenome / Metatranscriptome	236	Y
F019366	Metagenome / Metatranscriptome	230	Y
F022483	Metagenome / Metatranscriptome	214	Y
F023440	Metagenome / Metatranscriptome	210	Y
F025345	Metagenome / Metatranscriptome	202	Y
F033555	Metagenome / Metatranscriptome	177	N
F035904	Metagenome / Metatranscriptome	171	Y
F036811	Metagenome / Metatranscriptome	169	Y
F052745	Metagenome / Metatranscriptome	142	Y
F064927	Metagenome / Metatranscriptome	128	Y
F069201	Metagenome / Metatranscriptome	124	Y
F089295	Metagenome / Metatranscriptome	109	N
F092494	Metagenome / Metatranscriptome	107	Y
F105573	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209580_100000011012	F052745	GGAG	MSEAVREFLDRWVAEHVGAVPDEYRLRETVRLVALCREDAIHAGVDLADLRTAAGGNLLQTMLAALSAASARTKESVESD
Ga0209580_100000011044	F089295	GAGG	MGYLLPRAVIVLIAWGTTCLIMNTFTGVDPLVFYIAGGVWAFVGLISFGYLHKLRREEDAQFARAIARARAAAQNGHS
Ga0209580_100000011243	F002123	GAGG	MAEPGKEAPVMLPFADKAGGGWHVVVRYHAGHERRIDGFATEQEAMEWIVANAKEVDK
Ga0209580_100000011310	F105573	GGAG	MQTRHDQQKPAEGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKESE
Ga0209580_100000011322	F092494	AGGAG	MPTKHRKKSPDRPHTPKRLTPEQEDAQRNAAFAAIRALFAQVTQPWQSCPHGYCRRHHCCIAEAGPGACLGRHWPLLTRAEQEAAHSDVIDGGPRRVRPQTHTEWSLRRFPPSNFVHG
Ga0209580_100000011359	F015497	GGAG	MRWRACLVAAVAMATVEAAQAQSVAATIAEFGLIGTWATDCTQPASTGNYLTVYAVKPSGEVSRTYYDQPGHVYANYKITKAKRQAPDLLSYEQVWDFKGSPANIAGNRVQVLLNTANGKFQIVSSQGSDGSFFVKD
Ga0209580_100000011406	F033555	AGGA	MNDATIEIEELPTFDVSDEALEAAAGSEKAGYTLAYCSGLSVCPA
Ga0209580_100000011420	F022483	AGGAGG	MDRPMKKHDLDFNYDSHGLERSLESERAPDTAGYWFLAAVLFAFIAAGIIVYRAGNAEIQTAANYSNHPATQSDPVAPPPIVPR
Ga0209580_10000001166	F025345	GAGG	MKHVNPSEFERPRSASALRTAAIVIFATLLLLAAAIPQSLVNWLNDMNGNPVQETALGGAEALRNLSQRAGVATVYQRARDIFIAIAGAEPD
Ga0209580_10000001621	F036811	GGAG	MKGLVFGIGVAALGLAAVTPASADYAVVKFKDNGACRAWYDHTAKPWGTSQVLWVSVNSWDVAQTKGTYAMKHHWCKAWWK
Ga0209580_10000001722	F069201	GAG	MADDARTMSWTAPLRGLSHCGIAMLRLLALLGFGFMLGACTKCDVPTWQHSSAGNAPAACHDSPAPQ
Ga0209580_1000000183	F019366	GGAG	MFYGEKEYKAISPRERELVVAYLSYALEDVRALSEAGSRFLQMTIATITEETTLDTPIQPLQSTTPH
Ga0209580_1000000184	F018228	GGCGG	MIPSSAEPYTWIWADAPYLREQAQRCVRLARDCPHLPTAHELEAIGVELMQRAAELDHLQEERDADQSTRE
Ga0209580_10000001846	F064927	GGAGG	MPPHVTEHSSMPRYDGIEIMTIGLGVLLVVAIACVFGI
Ga0209580_10000001853	F023440	GGAGG	MKMAFDRPDVETLAAVIAHSQIVVAAPGRRLPADFDEVDIAILDWIIAESRHLGRRYVCM
Ga0209580_1000000186	F035904	AGGAG	MTKIELGDKVNRDTATVDQGKVRLGDWAPVFVRPTQAGDKVIRDTATVDQGKVRLGDWAPVFSPKK