Basic Information | |
---|---|
Family ID | F105573 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 100 |
Average Sequence Length | 57 residues |
Representative Sequence | MDTRRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV |
Number of Associated Samples | 70 |
Number of Associated Scaffolds | 100 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 92.00 % |
% of genes near scaffold ends (potentially truncated) | 17.00 % |
% of genes from short scaffolds (< 2000 bps) | 78.00 % |
Associated GOLD sequencing projects | 62 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.35 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (66.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (45.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (80.000 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 41.86% β-sheet: 0.00% Coil/Unstructured: 58.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.35 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Iron-Sulfur Acid Spring Watersheds Soil Vadose Zone Soil Surface Soil Peatlands Soil Soil Forest Soil Hardwood Forest Soil Permafrost Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Plant Litter Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGIcombinedJ26739_1003362173 | 3300002245 | Forest Soil | METRRDRQKHSEGHRLLESIGRDIKAHIDLAEPISERLNELIEQLVRINEREKEPEEV* |
JGIcombinedJ51221_102154301 | 3300003505 | Forest Soil | MEXRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA* |
Ga0058903_14761132 | 3300004103 | Forest Soil | METRRHRQKPSEGRELLEFIGREIKTHIDLTEPIPERLKELTERLVRRINERET* |
Ga0058893_11675132 | 3300004117 | Forest Soil | MKTRHDQQKPAQGRELLESIGREIRTNIDLAEPFPDRLNELIEQLVLRIDEREKEREEV* |
Ga0058886_13676031 | 3300004118 | Forest Soil | METRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA* |
Ga0058901_15714902 | 3300004120 | Forest Soil | MGTRHHQQNPVEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRRIDERE |
Ga0058901_15741581 | 3300004120 | Forest Soil | METRNQQRPSEGRELLEFIGRELKRDIDVAEPIPQRLNELIEQLMLRINEREKDPGEA* |
Ga0058897_111047262 | 3300004139 | Forest Soil | METRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLRINEREKEPEEV* |
Ga0058899_100221001 | 3300004631 | Forest Soil | METRRHQQQPSEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDAREKEPEEV* |
Ga0058899_100740442 | 3300004631 | Forest Soil | METRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLRINGREKEPEEV* |
Ga0058899_102046072 | 3300004631 | Forest Soil | TPMKTRHDRQNPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRRIDERE* |
Ga0058899_122220241 | 3300004631 | Forest Soil | MKTRHDQQKPSQGRELLESIGREIRTNIDLAEPIPDRLNELIEQLVLRIDERAKEPEEA* |
Ga0070731_100342024 | 3300005538 | Surface Soil | MERRRDQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV* |
Ga0070731_108613782 | 3300005538 | Surface Soil | METRNQQRPSEGRELLEFVGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA* |
Ga0070732_1000010912 | 3300005542 | Surface Soil | MQTRHDQQKPAEGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKESE* |
Ga0070762_100316177 | 3300005602 | Soil | MATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSGLIEQLVRINEREKEPEEV* |
Ga0070762_110399702 | 3300005602 | Soil | METRRHQQKPAEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRID |
Ga0070763_100696513 | 3300005610 | Soil | MATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPARLSELIEQLVRINEREKEPEEV* |
Ga0070766_100396601 | 3300005921 | Soil | MEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGGA* |
Ga0070766_103317571 | 3300005921 | Soil | METRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLR |
Ga0070717_111602322 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | METRHDQPKPSEGHELLEFIGREIKTHIDLAEPMPERLNELIEQLVLRINER |
Ga0075028_1002285213 | 3300006050 | Watersheds | METRHDQHKPSEARKLLEFIGRNFKTHIDLAEPIPERLNELIEQLVLRINEREKEPEEV* |
Ga0075017_1010255262 | 3300006059 | Watersheds | METRHDQQKPSRGRELLEYIGREIKTHIDLAEPIPERLNELIEQVALRINEREKEPEEV* |
Ga0075019_105045452 | 3300006086 | Watersheds | METRHDQQKPSQGRELLEYIGRDIKTHIDLAEPIPERLNELIEQLVLRINEREKEPEEV* |
Ga0070765_1005541542 | 3300006176 | Soil | MQTRRDQQKPSDGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLMRRIDERGKEPEEA* |
Ga0070765_1017601632 | 3300006176 | Soil | MDMRRDHQRPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV* |
Ga0073928_107862331 | 3300006893 | Iron-Sulfur Acid Spring | QQKPSEGRRLMEIIGRDIKSHIDLAEPIPERLNELIEQLVRINEREKEPEEV* |
Ga0099830_115086842 | 3300009088 | Vadose Zone Soil | MKTRRDQQKPSDGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRIDEREKELEK |
Ga0136449_1012680761 | 3300010379 | Peatlands Soil | MEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREK |
Ga0150983_103748472 | 3300011120 | Forest Soil | METRRHQQKPAEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDEREKEPEEV* |
Ga0150983_120237341 | 3300011120 | Forest Soil | RKKGRRSMETRRGKPRPSEGRQLLESIGRDIRTHIDLAEPIPERLNELIEQLVRRCDERE |
Ga0150983_121693412 | 3300011120 | Forest Soil | METRHKQQRASGGRELLEFIGRGIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV* |
Ga0150983_160604012 | 3300011120 | Forest Soil | MEMRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA* |
Ga0182024_101022315 | 3300014501 | Permafrost | METRRVQQKPSEGRQILDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEA* |
Ga0184584_1279442 | 3300019187 | Soil | METQRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV |
Ga0184584_1398361 | 3300019187 | Soil | METRHNQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV |
Ga0193751_10065982 | 3300019888 | Soil | METRRGRQKSAGHRLLESIGRDIKAHIDLAEPIPERLNELIEQLVQRCNEREKEPEEV |
Ga0210399_100407114 | 3300020581 | Soil | METRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA |
Ga0210401_101057223 | 3300020583 | Soil | MEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGEA |
Ga0210405_100810053 | 3300021171 | Soil | MKTRHDRQNPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRRIDERE |
Ga0210405_101097663 | 3300021171 | Soil | MEMRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA |
Ga0210405_113252652 | 3300021171 | Soil | METRRDRQKPSEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRIDERETEPEEV |
Ga0210405_113908471 | 3300021171 | Soil | QKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV |
Ga0210408_1000000450 | 3300021178 | Soil | MKTRHDQQKPAQGRELLESIGREIRTNIDLAEPIPDRLNELIEQLVLRIDEREKEREEV |
Ga0210408_100276293 | 3300021178 | Soil | METRRDRQMPSEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRIDERETEPEEV |
Ga0210408_102648802 | 3300021178 | Soil | METRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLRINEREKEPEEV |
Ga0210397_100642103 | 3300021403 | Soil | MEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA |
Ga0210397_111275941 | 3300021403 | Soil | MERRRDQQKSSEGPQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV |
Ga0210389_103292332 | 3300021404 | Soil | MQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMQRIDEREKEPEEA |
Ga0210389_105534361 | 3300021404 | Soil | VERRRYQQKSSEGRQFLDFIGREIKTHIDVAEPIPERLNELIEQLVRRINEREKEPEEV |
Ga0210389_113882501 | 3300021404 | Soil | MATRRDRQKPSEGRQLLEFIGRDIKTHIDLGEPIPERLSELIEQLVRINERE |
Ga0210389_114290362 | 3300021404 | Soil | MEMRRDHQRSSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV |
Ga0210387_111344791 | 3300021405 | Soil | MEMRRDHQRSSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV |
Ga0210387_115993992 | 3300021405 | Soil | MQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMQRIGEREKEPEEA |
Ga0210394_100895372 | 3300021420 | Soil | METRRGQPRPSEGRQLLESIGRDIRTHIDLAEPIPERLNELIEQLVRRCDERE |
Ga0210394_117017411 | 3300021420 | Soil | METRRHRQKPSAGRELLEFIGREIKTHIDLTEPIPERLKELTERLVRRINERET |
Ga0210384_105653122 | 3300021432 | Soil | MGTRHHQQNPVEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV |
Ga0210391_106271841 | 3300021433 | Soil | MQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMRRVDERGKEPEEA |
Ga0210390_100640166 | 3300021474 | Soil | MEMRNQQKPSEGRELLKFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGEA |
Ga0210390_111894272 | 3300021474 | Soil | MERRRYQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIDQLVRRINEREKEPEEV |
Ga0210392_109071811 | 3300021475 | Soil | GRTSMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMRRIDECGKEPEEA |
Ga0210398_100275974 | 3300021477 | Soil | METRRHRQQPSEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDAREKEPEEV |
Ga0210398_105309642 | 3300021477 | Soil | METRRHRQKPSEGRELLEFIGREIKTHIDLTEPIPERLKELTERLVRRINERET |
Ga0210402_101203631 | 3300021478 | Soil | MDMRRDHQRPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV |
Ga0242659_10261432 | 3300022522 | Soil | MEMRNQQKPSEGRELLKFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKEPEEV |
Ga0242664_11589491 | 3300022527 | Soil | MQTRRDQQKPSDGRQLLEFIGREIKTHIDLAVPIPERLNELIEQLVRRINEREKEPEEV |
Ga0242669_10758462 | 3300022528 | Soil | MEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKD |
Ga0212123_102567122 | 3300022557 | Iron-Sulfur Acid Spring | MATRRDRQKHSEGRQLLEFIGRDIKTHIDLAEPIPERLNELIEQLTQRISEIKKEPEEA |
Ga0224563_10041492 | 3300022731 | Soil | MEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGGA |
Ga0207692_101714081 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MKTRHDQQKPSQGRELLESIGREIRTNIDLAEPIADRLNELIEQLVLRIDEREKEPEET |
Ga0207693_103534701 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MKTRHDRQKPSQGRELLESIGREIRTNIDLAEPVPDRLNELIEQLALRIDEREKEPEET |
Ga0209332_10752552 | 3300027439 | Forest Soil | METRRGQPRPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRRCDEREEEPEEV |
Ga0209527_11290731 | 3300027583 | Forest Soil | MQTHRVQQNPSEGRQLLDFIGREIKTHIDLAAPIPDRLNELIEQLVRRIDEREKECEEV |
Ga0209329_11319422 | 3300027605 | Forest Soil | METRRDRQKHSEGHRLLESIGRDIKAHIDLAEPIPERLNELIEQLVRIDEREKEPEEV |
Ga0209580_100000011310 | 3300027842 | Surface Soil | MQTRHDQQKPAEGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKESE |
Ga0209693_100097883 | 3300027855 | Soil | MATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPARLSELIEQLVRINEREKEPEEV |
Ga0209579_100033845 | 3300027869 | Surface Soil | MERRRDQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV |
Ga0209579_106561692 | 3300027869 | Surface Soil | METRNQQRPSEGRELLEFVGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA |
Ga0209275_100032328 | 3300027884 | Soil | MATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSGLIEQLVRINEREKEPEEV |
Ga0209275_104292881 | 3300027884 | Soil | METRRHQQKPAEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDEREKEPEEV |
Ga0209624_105424271 | 3300027895 | Forest Soil | MQTRRDQHKPSDGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLMRRIDERGKEPEEA |
Ga0209067_106458002 | 3300027898 | Watersheds | METRHDQQKPSQGRELLEYIGRDIKTHIDLAEPIPERLNELIEQLVLRINEREKEPEEV |
Ga0209006_101258772 | 3300027908 | Forest Soil | MQTRRVQQNPSEGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLMRRIDECGKEPEEA |
Ga0209006_102744821 | 3300027908 | Forest Soil | METRRDRQKHSEGHRLLESIGRDIKAHIDLAEPISERLNELIEQLVRINEREKEPEEV |
Ga0265357_10114842 | 3300028023 | Rhizosphere | METRRHQQKPSEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDEREKEPEEV |
Ga0209526_104890702 | 3300028047 | Forest Soil | MKTRRDRQKPSEGRQLLESIGRDIKTHIDLAEPIPKRLNELIEQLVQRIDEREKELEEV |
Ga0308309_105320073 | 3300028906 | Soil | MQTRRDQQKPSDGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLVRRIDERGK |
Ga0308309_110609202 | 3300028906 | Soil | MQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMQRIDEREKAPEEA |
Ga0307482_10565192 | 3300030730 | Hardwood Forest Soil | MKTRHDRQNPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV |
Ga0265753_11513302 | 3300030862 | Soil | METRRRQQKPSEGRRLLEIIGRDIKSHIDLTEPIPERLNELIEQLVRIDEREKEPEEV |
Ga0073996_120111072 | 3300030998 | Soil | METRHDRQKPSGGRELLESIGREIKTHIDLAEPIPERLNELIEQLVKRCNEREKEPEEV |
Ga0170834_1104648162 | 3300031057 | Forest Soil | MATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSELIEQLVRINEREKEPEEV |
Ga0170822_140644573 | 3300031122 | Forest Soil | MATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSELIEQLVRINEREKEPEEVS |
Ga0170824_1172206831 | 3300031231 | Forest Soil | LPEGQGSEKNWRTPMETRHGQKKPSEGRQLLEFIGRDIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV |
Ga0170820_106394121 | 3300031446 | Forest Soil | METRRDHHKPSEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV |
Ga0170818_1121889361 | 3300031474 | Forest Soil | MQTRYDQKKPSEGRELLESIGRDIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV |
Ga0307477_103374262 | 3300031753 | Hardwood Forest Soil | METRHKQQRASGGRELLEFIGRGIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV |
Ga0316040_1173991 | 3300032121 | Soil | METRHNQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVLRINEREKDPGGA |
Ga0348332_102998072 | 3300032515 | Plant Litter | MDTRRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV |
Ga0348332_104300251 | 3300032515 | Plant Litter | METRHNQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLERRINEREKEPEEA |
⦗Top⦘ |