NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105573

Metagenome / Metatranscriptome Family F105573

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105573
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 57 residues
Representative Sequence MDTRRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Number of Associated Samples 70
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 92.00 %
% of genes near scaffold ends (potentially truncated) 17.00 %
% of genes from short scaffolds (< 2000 bps) 78.00 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(31.000 % of family members)
Environment Ontology (ENVO) Unclassified
(45.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(80.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74
1JGIcombinedJ26739_1003362173
2JGIcombinedJ51221_102154301
3Ga0058903_14761132
4Ga0058893_11675132
5Ga0058886_13676031
6Ga0058901_15714902
7Ga0058901_15741581
8Ga0058897_111047262
9Ga0058899_100221001
10Ga0058899_100740442
11Ga0058899_102046072
12Ga0058899_122220241
13Ga0070731_100342024
14Ga0070731_108613782
15Ga0070732_1000010912
16Ga0070762_100316177
17Ga0070762_110399702
18Ga0070763_100696513
19Ga0070766_100396601
20Ga0070766_103317571
21Ga0070717_111602322
22Ga0075028_1002285213
23Ga0075017_1010255262
24Ga0075019_105045452
25Ga0070765_1005541542
26Ga0070765_1017601632
27Ga0073928_107862331
28Ga0099830_115086842
29Ga0136449_1012680761
30Ga0150983_103748472
31Ga0150983_120237341
32Ga0150983_121693412
33Ga0150983_160604012
34Ga0182024_101022315
35Ga0184584_1279442
36Ga0184584_1398361
37Ga0193751_10065982
38Ga0210399_100407114
39Ga0210401_101057223
40Ga0210405_100810053
41Ga0210405_101097663
42Ga0210405_113252652
43Ga0210405_113908471
44Ga0210408_1000000450
45Ga0210408_100276293
46Ga0210408_102648802
47Ga0210397_100642103
48Ga0210397_111275941
49Ga0210389_103292332
50Ga0210389_105534361
51Ga0210389_113882501
52Ga0210389_114290362
53Ga0210387_111344791
54Ga0210387_115993992
55Ga0210394_100895372
56Ga0210394_117017411
57Ga0210384_105653122
58Ga0210391_106271841
59Ga0210390_100640166
60Ga0210390_111894272
61Ga0210392_109071811
62Ga0210398_100275974
63Ga0210398_105309642
64Ga0210402_101203631
65Ga0242659_10261432
66Ga0242664_11589491
67Ga0242669_10758462
68Ga0212123_102567122
69Ga0224563_10041492
70Ga0207692_101714081
71Ga0207693_103534701
72Ga0209332_10752552
73Ga0209527_11290731
74Ga0209329_11319422
75Ga0209580_100000011310
76Ga0209693_100097883
77Ga0209579_100033845
78Ga0209579_106561692
79Ga0209275_100032328
80Ga0209275_104292881
81Ga0209624_105424271
82Ga0209067_106458002
83Ga0209006_101258772
84Ga0209006_102744821
85Ga0265357_10114842
86Ga0209526_104890702
87Ga0308309_105320073
88Ga0308309_110609202
89Ga0307482_10565192
90Ga0265753_11513302
91Ga0073996_120111072
92Ga0170834_1104648162
93Ga0170822_140644573
94Ga0170824_1172206831
95Ga0170820_106394121
96Ga0170818_1121889361
97Ga0307477_103374262
98Ga0316040_1173991
99Ga0348332_102998072
100Ga0348332_104300251
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 41.86%    β-sheet: 0.00%    Coil/Unstructured: 58.14%
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Variant

510152025303540455055MDTRRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEVSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
34.0%66.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Surface Soil
Peatlands Soil
Soil
Forest Soil
Hardwood Forest Soil
Permafrost
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Plant Litter
Rhizosphere
4.0%6.0%6.0%31.0%5.0%23.0%12.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10033621733300002245Forest SoilMETRRDRQKHSEGHRLLESIGRDIKAHIDLAEPISERLNELIEQLVRINEREKEPEEV*
JGIcombinedJ51221_1021543013300003505Forest SoilMEXRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA*
Ga0058903_147611323300004103Forest SoilMETRRHRQKPSEGRELLEFIGREIKTHIDLTEPIPERLKELTERLVRRINERET*
Ga0058893_116751323300004117Forest SoilMKTRHDQQKPAQGRELLESIGREIRTNIDLAEPFPDRLNELIEQLVLRIDEREKEREEV*
Ga0058886_136760313300004118Forest SoilMETRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA*
Ga0058901_157149023300004120Forest SoilMGTRHHQQNPVEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRRIDERE
Ga0058901_157415813300004120Forest SoilMETRNQQRPSEGRELLEFIGRELKRDIDVAEPIPQRLNELIEQLMLRINEREKDPGEA*
Ga0058897_1110472623300004139Forest SoilMETRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLRINEREKEPEEV*
Ga0058899_1002210013300004631Forest SoilMETRRHQQQPSEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDAREKEPEEV*
Ga0058899_1007404423300004631Forest SoilMETRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLRINGREKEPEEV*
Ga0058899_1020460723300004631Forest SoilTPMKTRHDRQNPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRRIDERE*
Ga0058899_1222202413300004631Forest SoilMKTRHDQQKPSQGRELLESIGREIRTNIDLAEPIPDRLNELIEQLVLRIDERAKEPEEA*
Ga0070731_1003420243300005538Surface SoilMERRRDQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV*
Ga0070731_1086137823300005538Surface SoilMETRNQQRPSEGRELLEFVGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA*
Ga0070732_10000109123300005542Surface SoilMQTRHDQQKPAEGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKESE*
Ga0070762_1003161773300005602SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSGLIEQLVRINEREKEPEEV*
Ga0070762_1103997023300005602SoilMETRRHQQKPAEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRID
Ga0070763_1006965133300005610SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPARLSELIEQLVRINEREKEPEEV*
Ga0070766_1003966013300005921SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGGA*
Ga0070766_1033175713300005921SoilMETRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLR
Ga0070717_1116023223300006028Corn, Switchgrass And Miscanthus RhizosphereMETRHDQPKPSEGHELLEFIGREIKTHIDLAEPMPERLNELIEQLVLRINER
Ga0075028_10022852133300006050WatershedsMETRHDQHKPSEARKLLEFIGRNFKTHIDLAEPIPERLNELIEQLVLRINEREKEPEEV*
Ga0075017_10102552623300006059WatershedsMETRHDQQKPSRGRELLEYIGREIKTHIDLAEPIPERLNELIEQVALRINEREKEPEEV*
Ga0075019_1050454523300006086WatershedsMETRHDQQKPSQGRELLEYIGRDIKTHIDLAEPIPERLNELIEQLVLRINEREKEPEEV*
Ga0070765_10055415423300006176SoilMQTRRDQQKPSDGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLMRRIDERGKEPEEA*
Ga0070765_10176016323300006176SoilMDMRRDHQRPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV*
Ga0073928_1078623313300006893Iron-Sulfur Acid SpringQQKPSEGRRLMEIIGRDIKSHIDLAEPIPERLNELIEQLVRINEREKEPEEV*
Ga0099830_1150868423300009088Vadose Zone SoilMKTRRDQQKPSDGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRIDEREKELEK
Ga0136449_10126807613300010379Peatlands SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREK
Ga0150983_1037484723300011120Forest SoilMETRRHQQKPAEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDEREKEPEEV*
Ga0150983_1202373413300011120Forest SoilRKKGRRSMETRRGKPRPSEGRQLLESIGRDIRTHIDLAEPIPERLNELIEQLVRRCDERE
Ga0150983_1216934123300011120Forest SoilMETRHKQQRASGGRELLEFIGRGIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV*
Ga0150983_1606040123300011120Forest SoilMEMRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA*
Ga0182024_1010223153300014501PermafrostMETRRVQQKPSEGRQILDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEA*
Ga0184584_12794423300019187SoilMETQRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0184584_13983613300019187SoilMETRHNQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0193751_100659823300019888SoilMETRRGRQKSAGHRLLESIGRDIKAHIDLAEPIPERLNELIEQLVQRCNEREKEPEEV
Ga0210399_1004071143300020581SoilMETRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA
Ga0210401_1010572233300020583SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGEA
Ga0210405_1008100533300021171SoilMKTRHDRQNPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRRIDERE
Ga0210405_1010976633300021171SoilMEMRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA
Ga0210405_1132526523300021171SoilMETRRDRQKPSEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRIDERETEPEEV
Ga0210405_1139084713300021171SoilQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0210408_10000004503300021178SoilMKTRHDQQKPAQGRELLESIGREIRTNIDLAEPIPDRLNELIEQLVLRIDEREKEREEV
Ga0210408_1002762933300021178SoilMETRRDRQMPSEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRIDERETEPEEV
Ga0210408_1026488023300021178SoilMETRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLRINEREKEPEEV
Ga0210397_1006421033300021403SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA
Ga0210397_1112759413300021403SoilMERRRDQQKSSEGPQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0210389_1032923323300021404SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMQRIDEREKEPEEA
Ga0210389_1055343613300021404SoilVERRRYQQKSSEGRQFLDFIGREIKTHIDVAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0210389_1138825013300021404SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLGEPIPERLSELIEQLVRINERE
Ga0210389_1142903623300021404SoilMEMRRDHQRSSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0210387_1113447913300021405SoilMEMRRDHQRSSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0210387_1159939923300021405SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMQRIGEREKEPEEA
Ga0210394_1008953723300021420SoilMETRRGQPRPSEGRQLLESIGRDIRTHIDLAEPIPERLNELIEQLVRRCDERE
Ga0210394_1170174113300021420SoilMETRRHRQKPSAGRELLEFIGREIKTHIDLTEPIPERLKELTERLVRRINERET
Ga0210384_1056531223300021432SoilMGTRHHQQNPVEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV
Ga0210391_1062718413300021433SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMRRVDERGKEPEEA
Ga0210390_1006401663300021474SoilMEMRNQQKPSEGRELLKFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGEA
Ga0210390_1118942723300021474SoilMERRRYQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIDQLVRRINEREKEPEEV
Ga0210392_1090718113300021475SoilGRTSMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMRRIDECGKEPEEA
Ga0210398_1002759743300021477SoilMETRRHRQQPSEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDAREKEPEEV
Ga0210398_1053096423300021477SoilMETRRHRQKPSEGRELLEFIGREIKTHIDLTEPIPERLKELTERLVRRINERET
Ga0210402_1012036313300021478SoilMDMRRDHQRPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0242659_102614323300022522SoilMEMRNQQKPSEGRELLKFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKEPEEV
Ga0242664_115894913300022527SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAVPIPERLNELIEQLVRRINEREKEPEEV
Ga0242669_107584623300022528SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKD
Ga0212123_1025671223300022557Iron-Sulfur Acid SpringMATRRDRQKHSEGRQLLEFIGRDIKTHIDLAEPIPERLNELIEQLTQRISEIKKEPEEA
Ga0224563_100414923300022731SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGGA
Ga0207692_1017140813300025898Corn, Switchgrass And Miscanthus RhizosphereMKTRHDQQKPSQGRELLESIGREIRTNIDLAEPIADRLNELIEQLVLRIDEREKEPEET
Ga0207693_1035347013300025915Corn, Switchgrass And Miscanthus RhizosphereMKTRHDRQKPSQGRELLESIGREIRTNIDLAEPVPDRLNELIEQLALRIDEREKEPEET
Ga0209332_107525523300027439Forest SoilMETRRGQPRPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRRCDEREEEPEEV
Ga0209527_112907313300027583Forest SoilMQTHRVQQNPSEGRQLLDFIGREIKTHIDLAAPIPDRLNELIEQLVRRIDEREKECEEV
Ga0209329_113194223300027605Forest SoilMETRRDRQKHSEGHRLLESIGRDIKAHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0209580_1000000113103300027842Surface SoilMQTRHDQQKPAEGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKESE
Ga0209693_1000978833300027855SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPARLSELIEQLVRINEREKEPEEV
Ga0209579_1000338453300027869Surface SoilMERRRDQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0209579_1065616923300027869Surface SoilMETRNQQRPSEGRELLEFVGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA
Ga0209275_1000323283300027884SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSGLIEQLVRINEREKEPEEV
Ga0209275_1042928813300027884SoilMETRRHQQKPAEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0209624_1054242713300027895Forest SoilMQTRRDQHKPSDGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLMRRIDERGKEPEEA
Ga0209067_1064580023300027898WatershedsMETRHDQQKPSQGRELLEYIGRDIKTHIDLAEPIPERLNELIEQLVLRINEREKEPEEV
Ga0209006_1012587723300027908Forest SoilMQTRRVQQNPSEGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLMRRIDECGKEPEEA
Ga0209006_1027448213300027908Forest SoilMETRRDRQKHSEGHRLLESIGRDIKAHIDLAEPISERLNELIEQLVRINEREKEPEEV
Ga0265357_101148423300028023RhizosphereMETRRHQQKPSEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0209526_1048907023300028047Forest SoilMKTRRDRQKPSEGRQLLESIGRDIKTHIDLAEPIPKRLNELIEQLVQRIDEREKELEEV
Ga0308309_1053200733300028906SoilMQTRRDQQKPSDGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLVRRIDERGK
Ga0308309_1106092023300028906SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMQRIDEREKAPEEA
Ga0307482_105651923300030730Hardwood Forest SoilMKTRHDRQNPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0265753_115133023300030862SoilMETRRRQQKPSEGRRLLEIIGRDIKSHIDLTEPIPERLNELIEQLVRIDEREKEPEEV
Ga0073996_1201110723300030998SoilMETRHDRQKPSGGRELLESIGREIKTHIDLAEPIPERLNELIEQLVKRCNEREKEPEEV
Ga0170834_11046481623300031057Forest SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSELIEQLVRINEREKEPEEV
Ga0170822_1406445733300031122Forest SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSELIEQLVRINEREKEPEEVS
Ga0170824_11722068313300031231Forest SoilLPEGQGSEKNWRTPMETRHGQKKPSEGRQLLEFIGRDIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0170820_1063941213300031446Forest SoilMETRRDHHKPSEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV
Ga0170818_11218893613300031474Forest SoilMQTRYDQKKPSEGRELLESIGRDIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0307477_1033742623300031753Hardwood Forest SoilMETRHKQQRASGGRELLEFIGRGIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV
Ga0316040_11739913300032121SoilMETRHNQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVLRINEREKDPGGA
Ga0348332_1029980723300032515Plant LitterMDTRRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0348332_1043002513300032515Plant LitterMETRHNQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLERRINEREKEPEEA


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