Metagenome / Metatranscriptome Family F064927

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064927
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	38 residues
Representative Sequence	MPPHVTERSNSSRYDGIEIMTIGLGVLLVVAIACVFGI
Number of Associated Samples	90
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.53 %
% of genes near scaffold ends (potentially truncated)	4.69 %
% of genes from short scaffolds (< 2000 bps)	82.03 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.906 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.906 % of family members)
Environment Ontology (ENVO)	Unclassified (29.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.875 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.48% β-sheet: 0.00% Coil/Unstructured: 51.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF01075	Glyco_transf_9	10.16
PF00107	ADH_zinc_N	9.38
PF08240	ADH_N	6.25
PF13378	MR_MLE_C	3.12
PF13602	ADH_zinc_N_2	3.12
PF13414	TPR_11	2.34
PF13432	TPR_16	2.34
PF13417	GST_N_3	0.78
PF00072	Response_reg	0.78
PF01052	FliMN_C	0.78
PF14559	TPR_19	0.78
PF00753	Lactamase_B	0.78
PF08402	TOBE_2	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	10.16

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.91 %
Unclassified	root	N/A	21.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.91 %
Unclassified	root	N/A	21.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.91 %
Unclassified	root	N/A	21.09 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.81 %
Unclassified	root	N/A	21.09 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.41 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	51.56 %
Unclassified	root	N/A	21.09 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.41 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	42.97 %
Unclassified	root	N/A	21.09 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	16.41 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	2.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.09 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	19.53 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16.41 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	2.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.09 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	16.41 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.47 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	2.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.09 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	16.41 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	2.34 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10002847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12631	Open in IMG/M
3300000567\|JGI12270J11330_10005170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9172	Open in IMG/M
3300001082\|JGI12664J13189_1007689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300002245\|JGIcombinedJ26739_100213741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1822	Open in IMG/M
3300002245\|JGIcombinedJ26739_101606072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	548	Open in IMG/M
3300005538\|Ga0070731_10026560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3951	Open in IMG/M
3300005538\|Ga0070731_10305845	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300005542\|Ga0070732_10000133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	66977	Open in IMG/M
3300005542\|Ga0070732_10269247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1021	Open in IMG/M
3300005591\|Ga0070761_10050701	All Organisms → cellular organisms → Bacteria → Proteobacteria	2335	Open in IMG/M
3300005591\|Ga0070761_10546216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	718	Open in IMG/M
3300005602\|Ga0070762_10039979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2547	Open in IMG/M
3300005602\|Ga0070762_10981175	Not Available	579	Open in IMG/M
3300005602\|Ga0070762_10984832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	578	Open in IMG/M
3300005610\|Ga0070763_10832419	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300005921\|Ga0070766_10737233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	668	Open in IMG/M
3300006052\|Ga0075029_101000866	Not Available	577	Open in IMG/M
3300006102\|Ga0075015_100556932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	667	Open in IMG/M
3300006176\|Ga0070765_100226290	Not Available	1707	Open in IMG/M
3300006176\|Ga0070765_100293310	All Organisms → cellular organisms → Bacteria → Proteobacteria	1502	Open in IMG/M
3300006176\|Ga0070765_100676604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	974	Open in IMG/M
3300006176\|Ga0070765_101172414	Not Available	726	Open in IMG/M
3300006354\|Ga0075021_10993630	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300006893\|Ga0073928_10229389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1433	Open in IMG/M
3300006893\|Ga0073928_10243501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1379	Open in IMG/M
3300006893\|Ga0073928_10806481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	648	Open in IMG/M
3300006893\|Ga0073928_11043957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	555	Open in IMG/M
3300009522\|Ga0116218_1173263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	978	Open in IMG/M
3300009523\|Ga0116221_1266321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	741	Open in IMG/M
3300009525\|Ga0116220_10476296	Not Available	564	Open in IMG/M
3300009665\|Ga0116135_1448657	Not Available	529	Open in IMG/M
3300010379\|Ga0136449_100546075	All Organisms → cellular organisms → Bacteria → Proteobacteria	1995	Open in IMG/M
3300010379\|Ga0136449_100833620	All Organisms → cellular organisms → Bacteria → Proteobacteria	1517	Open in IMG/M
3300010379\|Ga0136449_101791238	Not Available	919	Open in IMG/M
3300010379\|Ga0136449_102240259	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	795	Open in IMG/M
3300011120\|Ga0150983_10099616	Not Available	573	Open in IMG/M
3300011120\|Ga0150983_10247989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	595	Open in IMG/M
3300011120\|Ga0150983_14114705	Not Available	511	Open in IMG/M
3300011120\|Ga0150983_15537392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	527	Open in IMG/M
3300011120\|Ga0150983_15538826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	539	Open in IMG/M
3300012083\|Ga0154000_1098201	Not Available	614	Open in IMG/M
3300012181\|Ga0153922_1058501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	857	Open in IMG/M
3300014164\|Ga0181532_10772154	Not Available	516	Open in IMG/M
3300014489\|Ga0182018_10139234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1393	Open in IMG/M
3300014489\|Ga0182018_10247881	All Organisms → cellular organisms → Bacteria → Proteobacteria	981	Open in IMG/M
3300014489\|Ga0182018_10708824	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	524	Open in IMG/M
3300014501\|Ga0182024_12654406	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	537	Open in IMG/M
3300014657\|Ga0181522_10066910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2040	Open in IMG/M
3300014657\|Ga0181522_10839965	Not Available	564	Open in IMG/M
3300014657\|Ga0181522_10953606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	530	Open in IMG/M
3300017938\|Ga0187854_10331735	Not Available	646	Open in IMG/M
3300017940\|Ga0187853_10377046	Not Available	631	Open in IMG/M
3300018034\|Ga0187863_10617688	Not Available	610	Open in IMG/M
3300018038\|Ga0187855_10538665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	680	Open in IMG/M
3300019258\|Ga0181504_1006483	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	529	Open in IMG/M
3300019258\|Ga0181504_1150089	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	504	Open in IMG/M
3300019881\|Ga0193707_1084401	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300019888\|Ga0193751_1026641	All Organisms → cellular organisms → Bacteria	2770	Open in IMG/M
3300020021\|Ga0193726_1000073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	178058	Open in IMG/M
3300020579\|Ga0210407_10540927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	910	Open in IMG/M
3300020580\|Ga0210403_10803255	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	748	Open in IMG/M
3300020581\|Ga0210399_10924993	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	706	Open in IMG/M
3300020582\|Ga0210395_10001797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16644	Open in IMG/M
3300020583\|Ga0210401_10261555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1590	Open in IMG/M
3300020583\|Ga0210401_11340499	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	573	Open in IMG/M
3300021088\|Ga0210404_10130880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1298	Open in IMG/M
3300021170\|Ga0210400_10469307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1039	Open in IMG/M
3300021171\|Ga0210405_10023870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4933	Open in IMG/M
3300021181\|Ga0210388_11167138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	655	Open in IMG/M
3300021401\|Ga0210393_10910322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300021401\|Ga0210393_11507171	Not Available	535	Open in IMG/M
3300021402\|Ga0210385_11070757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	619	Open in IMG/M
3300021403\|Ga0210397_10615918	Not Available	830	Open in IMG/M
3300021404\|Ga0210389_10138313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1886	Open in IMG/M
3300021404\|Ga0210389_10831294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	721	Open in IMG/M
3300021420\|Ga0210394_10056071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3435	Open in IMG/M
3300021420\|Ga0210394_10341127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1316	Open in IMG/M
3300021432\|Ga0210384_11216464	Not Available	658	Open in IMG/M
3300021432\|Ga0210384_11698279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	537	Open in IMG/M
3300021474\|Ga0210390_10335929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1279	Open in IMG/M
3300021559\|Ga0210409_11671950	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	513	Open in IMG/M
3300021861\|Ga0213853_10380743	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	519	Open in IMG/M
3300021861\|Ga0213853_11536728	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
3300022499\|Ga0242641_1036251	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	559	Open in IMG/M
3300022506\|Ga0242648_1029002	Not Available	757	Open in IMG/M
3300022506\|Ga0242648_1085337	Not Available	533	Open in IMG/M
3300022510\|Ga0242652_1053384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	516	Open in IMG/M
3300022522\|Ga0242659_1083680	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	610	Open in IMG/M
3300022527\|Ga0242664_1112968	Not Available	569	Open in IMG/M
3300022527\|Ga0242664_1139213	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	528	Open in IMG/M
3300022530\|Ga0242658_1214641	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	529	Open in IMG/M
3300022532\|Ga0242655_10070697	Not Available	904	Open in IMG/M
3300022533\|Ga0242662_10290979	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	542	Open in IMG/M
3300022557\|Ga0212123_10073010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2945	Open in IMG/M
3300022708\|Ga0242670_1079305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300022721\|Ga0242666_1134868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	594	Open in IMG/M
3300022722\|Ga0242657_1223944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	529	Open in IMG/M
3300022726\|Ga0242654_10363587	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	547	Open in IMG/M
3300024225\|Ga0224572_1035114	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300025494\|Ga0207928_1067878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	667	Open in IMG/M
3300027090\|Ga0208604_1000295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7219	Open in IMG/M
3300027370\|Ga0209010_1000855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8672	Open in IMG/M
3300027439\|Ga0209332_1000776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7120	Open in IMG/M
3300027497\|Ga0208199_1067884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	750	Open in IMG/M
3300027567\|Ga0209115_1003987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2910	Open in IMG/M
3300027570\|Ga0208043_1017905	Not Available	2277	Open in IMG/M
3300027583\|Ga0209527_1061009	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300027678\|Ga0209011_1008573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3458	Open in IMG/M
3300027842\|Ga0209580_10000001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1658941	Open in IMG/M
3300027884\|Ga0209275_10696041	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	585	Open in IMG/M
3300027908\|Ga0209006_10063914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3288	Open in IMG/M
3300027908\|Ga0209006_10332975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1289	Open in IMG/M
3300028906\|Ga0308309_10664235	Not Available	905	Open in IMG/M
3300028906\|Ga0308309_10886915	Not Available	774	Open in IMG/M
3300030743\|Ga0265461_12998720	Not Available	567	Open in IMG/M
3300030832\|Ga0265752_108253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300030862\|Ga0265753_1029257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	880	Open in IMG/M
3300030873\|Ga0265751_115473	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	524	Open in IMG/M
3300030963\|Ga0265768_113793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	550	Open in IMG/M
3300031018\|Ga0265773_1048197	Not Available	505	Open in IMG/M
3300031090\|Ga0265760_10009234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2818	Open in IMG/M
3300031708\|Ga0310686_103101062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1101	Open in IMG/M
3300031708\|Ga0310686_107374327	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300031715\|Ga0307476_10001552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	13915	Open in IMG/M
3300031715\|Ga0307476_10642017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	787	Open in IMG/M
3300032160\|Ga0311301_11354280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	893	Open in IMG/M
3300032160\|Ga0311301_11580967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	800	Open in IMG/M
3300032805\|Ga0335078_11766620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	675	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.66%
Host-Associated	Host-Associated	2.34%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.25%
Aquatic	Environmental → Aquatic	16.41%
Fungi	Host-Associated → Fungi	1.56%
Plants	Host-Associated → Plants	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.25%
Freshwater	Environmental → Aquatic → Freshwater	10.16%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.91%
Sediment	Environmental → Aquatic → Sediment	2.34%
Mycelium	Host-Associated → Fungi → Mycelium	1.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.91%
Loam	Environmental → Terrestrial → Soil → Loam	23.44%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.59%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.34%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.56%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.44%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.66%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.81%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.34%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.56%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	10.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.69%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.12%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.34%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.34%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.56%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.56%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.78%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012083	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC084 MetaG	Host-Associated	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022499	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030832	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030873	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030963	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031018	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100028477	3300000567	Peatlands Soil	MPPHVTERSSSSRYDGIEIMTIGLGVLLIVTIACVFGI*
JGI12270J11330_100051704	3300000567	Peatlands Soil	MPPHVTERSNSSRYDGIEIMTIGLGVLLVVAIACVFGI*
JGI12664J13189_10076892	3300001082	Forest Soil	MPPHVTERSHSSRYDGVEIMTIGLGVLLIVAIACVFGI*
JGIcombinedJ26739_1002137412	3300002245	Forest Soil	MPPHVTERSGAPRYDGIEILTIGLGVLLIVTIACVFGI*
JGIcombinedJ26739_1016060721	3300002245	Forest Soil	MPPHVTERTSSSRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0070731_100265602	3300005538	Surface Soil	MPPHVTERSSSSRYDGVEIMTIGLGVLLVVAIACVFGI*
Ga0070731_103058453	3300005538	Surface Soil	MPPHVTERSNSSRYDGVEIMTIGLGVLLIVAIACVFGI*
Ga0070732_1000013333	3300005542	Surface Soil	MPPHVTEHSSMPRYDGIEIMTIGLGVLLVVAIACVFGI*
Ga0070732_102692472	3300005542	Surface Soil	MPPYVTERSSTPRYDGIEIMTIGLGVLLVVAIACVFGI*
Ga0070761_100507012	3300005591	Soil	MPPHVTERSNSSRYDGIEIMTIGLGVLLIVTIACVFGI*
Ga0070761_105462162	3300005591	Soil	MPPHVTERSSAPRYDGIEILTIGLGVLLIVAIACVFGI*
Ga0070762_100399793	3300005602	Soil	MPPHVTGSSRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0070762_109811751	3300005602	Soil	MPPHVTERSSASRYDGIEILTIGLGVLLIVAIACVFGI*
Ga0070762_109848322	3300005602	Soil	MPPQVTERSNSSRYDGVEIMTIGLGVVLIVAIACVFGI*
Ga0070763_108324191	3300005610	Soil	SSTSEREARVMPPHVTERPNSSRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0070766_107372332	3300005921	Soil	MPPHVTERSNSSRYDGIEIMTIGIGVLLVVAIACVFGI*
Ga0075029_1010008662	3300006052	Watersheds	MPPQVSERSSTPRYDGIEIMTIGLGILLVVTIACVFGI*
Ga0075015_1005569323	3300006102	Watersheds	MPPHITERTNSTRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0070765_1002262903	3300006176	Soil	MPPHVTQRSSSSRYDGIEIMTIGLGVLLVVAIACVFGI*
Ga0070765_1002933103	3300006176	Soil	MPPHVTERSSAWRYDGIEILTIGLGVLLIVAIACVFGI*
Ga0070765_1006766042	3300006176	Soil	MPPHVAERSSASRYDGIEILTIGLGVLLIVAIACVFGI*
Ga0070765_1011724142	3300006176	Soil	MPPHVNERSSSSRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0075021_109936302	3300006354	Watersheds	MPLHVSERTNSSRYDGIEIMTIGVGILLVVTIACVFGI*
Ga0073928_102293893	3300006893	Iron-Sulfur Acid Spring	MPPHVTERTNSSRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0073928_102435013	3300006893	Iron-Sulfur Acid Spring	MPPHVSERSSASRYDGIEILTIGLGVLLVVAIACVFGI*
Ga0073928_108064812	3300006893	Iron-Sulfur Acid Spring	MPPHVTERSSSSRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0073928_110439572	3300006893	Iron-Sulfur Acid Spring	MPPHVTERTSSLRYDGIEMMTIGLGVLLVVTIACVFGI*
Ga0116218_11732633	3300009522	Peatlands Soil	MPPHVTERPSSSRYDGIEIMTIGLGVLLIVTIACVFGI*
Ga0116221_12663212	3300009523	Peatlands Soil	MPPHVTERTNSSRFDGIEIMTIGLGVLLVVTIACVFGI*
Ga0116220_104762962	3300009525	Peatlands Soil	MPPHVTERSNSSRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0116135_14486572	3300009665	Peatland	MPPHVTERPNSSRYDGIEIMTIGLGVVLIVAIACVFGI*
Ga0136449_1005460751	3300010379	Peatlands Soil	MPPHVTELTISSRFDGNEIMTIGLGVLLVVTIACVFGI*
Ga0136449_1008336203	3300010379	Peatlands Soil	MPPHVTERSNASRYDGIEILTIGLGVLLIVAIACVFGV*
Ga0136449_1017912382	3300010379	Peatlands Soil	MPPHITERSNSSRYDGIEILTIGLGVLLIVAIACVFGI*
Ga0136449_1022402593	3300010379	Peatlands Soil	MPPHVTERSNPSRYDGIEILTIGLGVLLIVTIACVFGI*
Ga0150983_100996162	3300011120	Forest Soil	MPPHVTERTNSYDGIESMTIGLGVLLVVTIACVFGI*
Ga0150983_102479892	3300011120	Forest Soil	MPPHVSERTNSSRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0150983_141147052	3300011120	Forest Soil	MPPHITERTNSSRYDGIEIMTIGLGVLLVVTIACVFGI*
Ga0150983_155373922	3300011120	Forest Soil	MPPHVTERSSSSRYDGIEIMTIGLGVLLVVAIACVFGI*
Ga0150983_155388262	3300011120	Forest Soil	MPPHVTERSNSSRYDGIEILTIGLGVLLIVTIACVFGI*
Ga0154000_10982011	3300012083	Attine Ant Fungus Gardens	RVMPPHVTERSNSSRYDGVEIMTIGLGVLLIVAIACVFGI*
Ga0153922_10585012	3300012181	Attine Ant Fungus Gardens	MPPHVTERSNSSRYDGIEIMTIGIGVLLVVAIVCVFGV*
Ga0181532_107721541	3300014164	Bog	MPPHVTERSNSSRYDGVEIMTIGLGVVLIVAIACVFGI*
Ga0182018_101392343	3300014489	Palsa	MPPHVTEHSNSSRYDGIEIMTIGLGVLLVVAIACVFGI*
Ga0182018_102478811	3300014489	Palsa	MPPHVTERSNASRYDGIEIMTIGLGVVLIVAIACVFGI*
Ga0182018_107088241	3300014489	Palsa	MPPHVTECSSASRYDGIEIMTIGLGVLLIVAIACVFGI*
Ga0182024_126544061	3300014501	Permafrost	MPPHVTERSSASRYDGIEILTIGLGVLLVVAIACVFGI*
Ga0181522_100669103	3300014657	Bog	MPPQISERSSTPRYDGIEIMTIGLGILLVVTIACVFGI*
Ga0181522_108399651	3300014657	Bog	MPPHVTERSNASRYDGIEIITIGLGVLLIVAIACVFGV*
Ga0181522_109536062	3300014657	Bog	MPPHVTERSNSSRYDGIEIMTIGLGVLLIVAIACVFGI*
Ga0187854_103317352	3300017938	Peatland	MPPHVTERSNSSRYDGIEIMTIGLGVLLVVAIACVFGI
Ga0187853_103770461	3300017940	Peatland	REARVMPPHVTERSNSSRYDGIEIMTIGLGVLLVVAIACVFGI
Ga0187863_106176882	3300018034	Peatland	MPPHVTERSNSSRYDGVEIMTIGLGVLLIVAIACVFGI
Ga0187855_105386652	3300018038	Peatland	MPPHVTERPNSSRYDGIEIMTIGLGVLLVVAIACVFGI
Ga0181504_10064832	3300019258	Peatland	MPPHVTERSNASRYDGIEIITIGLGVLLIVAIACVFGV
Ga0181504_11500892	3300019258	Peatland	MPPQISERSSTPRYDGIEIMTIGLGILLVVTIACVFGI
Ga0193707_10844012	3300019881	Soil	MPPHVTEHSNSSRYDGIEIMTIGLGVLLVVAIACVFGI
Ga0193751_10266413	3300019888	Soil	MPPHVTERTSSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0193726_1000073116	3300020021	Soil	MPPHVTEHSSSSRYDGIEIMTIGLGVLLVVAIACVFGV
Ga0210407_105409273	3300020579	Soil	MPPHVTERSNSSRYDGIEIMTIGLGVLLIVTIACVFGI
Ga0210403_108032552	3300020580	Soil	MPPHVTERTNSSRYDGIEIMTIGLGVLLVVTIACMFGI
Ga0210399_109249932	3300020581	Soil	MPPHVTERTNSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0210395_100017976	3300020582	Soil	MPPHVTERPNSSRYDGIEIMTIGLGVVLIVAMACVFGI
Ga0210401_102615552	3300020583	Soil	MPPHVTERTNSYDGIEIMTIGLGVLLVVTIACVFGI
Ga0210401_113404991	3300020583	Soil	MPPHVTGSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0210404_101308803	3300021088	Soil	MPPHVTERSSASRYDGIEILTIGLGVVLIVAIACVFGI
Ga0210400_104693073	3300021170	Soil	MPPHVTERSSASRYDGIEILTIGLGVLLIVAIACVFGI
Ga0210405_100238702	3300021171	Soil	MPPHVSERTNSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0210388_111671382	3300021181	Soil	MPPHVTERSSAPRYDGIEILTIGLGVLLIVAIACVFGI
Ga0210393_109103222	3300021401	Soil	MPPHVTERSSAPRYDGVEILTIGLGVLLIVAIACVFGI
Ga0210393_115071712	3300021401	Soil	MPPHVNERSSSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0210385_110707572	3300021402	Soil	MPPHVTERSSASRYDGIEILTIGLGVLLIVAIACVF
Ga0210397_106159182	3300021403	Soil	EREARVMPPHVTERSSASRYDGIEILTIGLGVLLIVAIACVFGI
Ga0210389_101383132	3300021404	Soil	MPPHVTGSSRYEGIEIMTIGLGVLLVVTIACVFGI
Ga0210389_108312941	3300021404	Soil	MPPHVTERTNSYDGIEILTIGLGVLLVVTIACVFGI
Ga0210394_100560713	3300021420	Soil	MPPHVTERSNFSRYDSIEIMTICLGVLLVVTIACVFGI
Ga0210394_103411273	3300021420	Soil	MPPHVTERSNSSRYDGIEIMTIGIGVLLVVAIVCVFGV
Ga0210384_112164641	3300021432	Soil	MPPHVTERPNSSRYDGIEIMTISLGVVLIVAMACVFGI
Ga0210384_116982791	3300021432	Soil	MPPHVTERSSSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0210390_103359293	3300021474	Soil	MPPHVTERSSSSRYDGIEIMTIGLGVLLIVAIACVFGI
Ga0210409_116719501	3300021559	Soil	MPPHVTGSSRYDGIEIMTIGLGVLLVVAIACVFGI
Ga0213853_103807431	3300021861	Watersheds	MPPHVTERTNSSRYDGIEIMTIGLGVLLVVTIACVFGM
Ga0213853_115367281	3300021861	Watersheds	HVSERASSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0242641_10362511	3300022499	Soil	MPPHVTERSSAWRYDGIEILTIGLGVLLIVAIACVFGI
Ga0242648_10290022	3300022506	Soil	MPPQVTERSSASRYDGIEILTIGLGVLLIVAIACVFGI
Ga0242648_10853372	3300022506	Soil	MPPHVTERTNPSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0242652_10533842	3300022510	Soil	MPPHVTERTNSSRYDGIEIITIGLGVLLVVTIACVFGI
Ga0242659_10836802	3300022522	Soil	MPPYVTERTNSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0242664_11129682	3300022527	Soil	MPPHVTERSSSSRYDGVEIMTIGLGVLLVVAIACVFGI
Ga0242664_11392132	3300022527	Soil	MPPHVTERSSASRYDGIEILTIGLGVLLIVAIACVCGI
Ga0242658_12146412	3300022530	Soil	MPPHVTERTNSSRYDGVEIMTIGLGVLLVVTIACVFGI
Ga0242655_100706972	3300022532	Soil	VMPPHVTERSSAPRYDGVEILTIGLGVLLIVAIACVFGI
Ga0242662_102909792	3300022533	Soil	MPPHITERTNSYRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0212123_100730103	3300022557	Iron-Sulfur Acid Spring	MPPHVSERSSASRYDGIEILTIGLGVLLVVAIACVFGI
Ga0242670_10793052	3300022708	Soil	MPPHVTGSSRYERIEIMTIGLGVLLVVTIACVFGI
Ga0242666_11348682	3300022721	Soil	MPPHVTERPNSSRYDGIEIITIGLGVVLIVAMACVFGI
Ga0242657_12239442	3300022722	Soil	MPPHITERTNSSRYDGIEIMTIVLGVLLVVTIACVFGV
Ga0242654_103635872	3300022726	Soil	MPPHVSERTTSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0224572_10351143	3300024225	Rhizosphere	MPPHVTERSNSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0207928_10678782	3300025494	Arctic Peat Soil	MPPQVTERTNSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0208604_10002953	3300027090	Forest Soil	MPPHVCERTNSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0209010_10008552	3300027370	Forest Soil	MPPHVTERSHSSRYDGVEIMTIGLGVLLIVAIACVFGI
Ga0209332_10007765	3300027439	Forest Soil	MPPHVTGRSNSSRYDGIEIMTIGIGVLLVVAIVCVFGV
Ga0208199_10678841	3300027497	Peatlands Soil	MPPHVTERPSSSRYDGIEIMTIGLGVLLIVTIACVFGI
Ga0209115_10039872	3300027567	Forest Soil	MPPHVTERSNSPRYDGIEIMTIGLGVLLIVAIACVFGI
Ga0208043_10179053	3300027570	Peatlands Soil	MPPHVTERSSSSRYDGIEIMTIGLGVLLIVTIACVFGI
Ga0209527_10610092	3300027583	Forest Soil	MPPHVTERSSSSRYDGIEIMTIGLGVLLVVAIACVFGI
Ga0209011_10085733	3300027678	Forest Soil	MPPHVTERSSASRYDGIEILTIGVGVLLVVAIACVFGV
Ga0209580_10000001846	3300027842	Surface Soil	MPPHVTEHSSMPRYDGIEIMTIGLGVLLVVAIACVFGI
Ga0209275_106960411	3300027884	Soil	MPPHVTERSNSSRYDGIEIMTIGLGVLLIVAIACVFGI
Ga0209006_100639142	3300027908	Forest Soil	MPPHVTERSGAPRYDGIEILTIGLGVLLIVTIACVFGI
Ga0209006_103329751	3300027908	Forest Soil	MPPHVTERTNSPRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0308309_106642352	3300028906	Soil	MPPHVAERSSASRYDGIEILTIGLGVLLIVAIACVFGI
Ga0308309_108869151	3300028906	Soil	MPPQVTERSNSSRYDGVEIMTIGLGVVLIVAIACVFGI
Ga0265461_129987202	3300030743	Soil	MPPHFEHSGMSRYDGIEILTVGLGVVLIVTIVLVFGL
Ga0265752_1082532	3300030832	Soil	MPPHVSERSSASRYDGIEILTIGLGVLLIVAIACVFGI
Ga0265753_10292573	3300030862	Soil	MPPHVTERTNPSRYDGIEIMTIGLGVLLIVTIACVFGI
Ga0265751_1154732	3300030873	Soil	MPPHVTERSNSSRYDGVEIMTIGLGVLLIVAISCVFGI
Ga0265768_1137932	3300030963	Soil	MPPHVTERSSAWRYDGVEILTIGLGVLLIVAIACVFGI
Ga0265773_10481972	3300031018	Soil	MPPHVTERPNSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0265760_100092342	3300031090	Soil	MPPHVTERSSASRYDGVEILTIGLGILLIVAIACVFGI
Ga0310686_1031010622	3300031708	Soil	MPPHVTERTSSSRYDGIEIMTIGLGVLLVVTIACAFGI
Ga0310686_1073743272	3300031708	Soil	MPPHLTERSNSSRYDGVEIMTIGLGVLLIVAIACVFGI
Ga0307476_100015526	3300031715	Hardwood Forest Soil	MPPHVSERSNSSRYDGIEIMTIGIGVLLVVAIVCVFGV
Ga0307476_106420171	3300031715	Hardwood Forest Soil	MPPHVTDRTNSSRYDGIEIMTIGLGVLLVVTIACVFGI
Ga0311301_113542802	3300032160	Peatlands Soil	MPPHVTERSNASRYDGIEILTIGLGVLLIVAIACVFGV
Ga0311301_115809673	3300032160	Peatlands Soil	MPPHVTERSNPSRYDGIEILTIGLGVLLIVTIACVFGI
Ga0335078_117666202	3300032805	Soil	MPPHVTERSNSSRYDGIEIMTIGLGVLLIVAIACVFGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064927

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences