NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10000176

Scaffold Ga0209229_10000176


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10000176 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24904
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (69.49%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001460Metagenome / Metatranscriptome690Y
F004431Metagenome / Metatranscriptome438Y
F006744Metagenome / Metatranscriptome365Y
F021757Metagenome217Y
F029434Metagenome / Metatranscriptome188Y
F039631Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000017629F001460AGGMADIDEMINAVHDAKLFYLRSPSDLMDKEPLVKSLEKTVSFLQGLWAEGYFDGYQD
Ga0209229_1000017646F029434GAGGMKKYTFGVWLDINAEDEEMAVSLFDEVVKNTFVSDSYCFEWKEVE
Ga0209229_1000017648F006744AGGAMNLDEFKAHVIAQREASKAEALSVLSATITETKGKEN
Ga0209229_1000017650F000447AGGAMGYIEIFRINEEGAGWVDLSDATPSELLDLEIGLFQEGAL
Ga0209229_1000017655F021757GGAMMTRKDYVKTAEILSTYKDLIGNSFTYEDLVDDFAVMFSEDNERFNSDKFWEACMK
Ga0209229_1000017657F004431N/AMKITYSIWDGSQLLGTNFTASTPEEMEKFVGELKKVSKNVVAHMRKVEQN
Ga0209229_1000017658F039631N/AMTTLDKNKINHSKFGHLDLNARITLAAEMVANGEVVSFRGASADTYNKVIALANRIKQEQEFPQCPCGQCD
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