Scaffold Ga0209107

Basic Information
Taxon OID	3300027797 Open in IMG/M
Scaffold ID	Ga0209107_10000474 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027797 Open in IMG/M

Scaffold ID

Ga0209107_10000474 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23387
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (75.86%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

23387

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (75.86%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001280	Metagenome / Metatranscriptome	732	Y
F008814	Metagenome / Metatranscriptome	327	Y
F021988	Metagenome / Metatranscriptome	216	Y
F036237	Metagenome / Metatranscriptome	170	Y
F040629	Metagenome / Metatranscriptome	161	Y
F060917	Metagenome / Metatranscriptome	132	Y
F066789	Metagenome / Metatranscriptome	126	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_100004741	F036237	N/A	NLDEGQLFADYRFAEMSDSNYLKGRFNLFYDLNKGDQYYLEYEEE
Ga0209107_1000047411	F066789	GAG	MCDKYGCDYQLDLDGQVTCFNCGAMDDDMPNPRSIDNSDFERQVDFE
Ga0209107_1000047420	F060917	GGAG	MIDWLVNRIFRWDTLRHAVFDEVHMYDHLDSIMSDPDAMKTASLSWMEGDMWYGWTHNSDTGRYYFDDIGNKSLIGLWDDQWLKEAEMVQ
Ga0209107_1000047435	F021988	N/A	MSNFQKEDGTGTTPPASGSAAGAVTSREATRKAPRQGLKIDTNKHGIRRETSTTPRPPKKTGRKKI
Ga0209107_1000047436	F001280	GAG	MCFECGCESVGSTTGITPVTIVEASRDGNSGLTLSMSSTPEQTRQFINE
Ga0209107_1000047438	F073565	AGGAG	MSDGLNLTGFNEVKPAVQHTIGEQYAADPAGAFASTDKSTQDGSGVGQGGK
Ga0209107_1000047444	F008814	GGA	MAEITVLDGIIKDLGQELYQKWYNGLAQEDRTPEASEAMAKNAGETTFWVIQNFMIRFNEAAEALKDK
Ga0209107_1000047455	F040629	N/A	MDKYSIKLEVLAEVDAFSEADAREYISDIFNVDDEIKNVKVVKISKNS
Ga0209107_100004747	F000441	N/A	MSDNYINDQLSTAQKLLWSGSETENIAAHNIISKLIQDRVEQADQN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209107_10000474

Overview

Ecosystem & Geography

Associated Families

Sequences