Scaffold Ga0209972_10058872

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10058872
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2058
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium rivuli → Flavobacterium rivuli WB 3.3-2 = DSM 21788 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037637	Metagenome	167	Y
F104496	Metagenome	100	N
F105026	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100588724	F037637	N/A	MNWTSKRKRTKQVQICFEWTDKSDLRVILDDLRALIVSGVESYHDQKKSIEIADKWHEVEFQQEYIDKIHESTESDINGELKLVIKSNF
Ga0209972_100588725	F105026	N/A	MNSKIKNVVNTYFPHRPNVTYLKRKWETKICPEDKGGSFNEKLYRDYLDAIINYTK
Ga0209972_100588726	F104496	N/A	MKKRTGILINSIIILLGYTYESYLLLGIGVICLTLVLISKTKRHELKN