Scaffold Ga0209972

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10006186 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209972_10006186 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8633
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

8633

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (86.96%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F006743	Metagenome / Metatranscriptome	365	Y
F033321	Metagenome	177	Y
F037113	Metagenome / Metatranscriptome	168	Y
F042880	Metagenome	157	Y
F051794	Metagenome	143	N
F064681	Metagenome	128	Y
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000618613	F042880	GAG	MANYTTIGELIEHLKGEDLSAPIIYQYYLAEHFEISEEVFAEVARDFDSLIPCSDSYEVISSEINSKREEVNA
Ga0209972_1000618615	F079999	AGGGGG	VKDIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGK
Ga0209972_1000618617	F033321	N/A	VSREIEVLREEYRRAVENPIFDDPKDYCILLDLIQDRIDEIEATYANF
Ga0209972_1000618619	F064681	GAGG	MKHTLEECPYISSEYQDTCQECGELSSCVCLASIVQEWEIEKVGEGAFAYRYQFRQYKSDLVGQFGYAGSYREAMDNIAHAVKCKEARA
Ga0209972_100061865	F006743	GGAGG	MRTENWQSNTPGLRLVGEGESGSASSPYGPMRADLTTTHRTQLLVLSELLNSLEKEVEILHSKYCEAYVILIDVMERLARLTSSLLPTDIIKEKDV
Ga0209972_100061866	F051794	GGAGG	MKTIDKRKEKAERRAVWLRNYQRARGRALTKLAQQYPDQYKEILEQERLSDEANGKAWLDITGATDNSAGVLTNADGYNNTLRSEQTNGDKQDEGYLGGEK
Ga0209972_100061868	F002827	GGAGG	MNKEYYQAKADLCRDLFIKQVGEGDNKEAGANLIRMVNALNQINLINYKEEKGNEAN
Ga0209972_100061869	F037113	AGGAGG	MSKGWTVWVGGSEINWQHYTHKIDAERIAEFWREVKGYDDVRVEEVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209972_10006186

Overview

Ecosystem & Geography

Associated Families

Sequences