NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F079999

Metagenome Family F079999

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F079999
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 46 residues
Representative Sequence VSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGK
Number of Associated Samples 77
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 81.74 %
% of genes near scaffold ends (potentially truncated) 14.78 %
% of genes from short scaffolds (< 2000 bps) 57.39 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (62.609 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(35.652 % of family members)
Environment Ontology (ENVO) Unclassified
(56.522 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(45.217 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 72.73%    β-sheet: 0.00%    Coil/Unstructured: 27.27%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF02767DNA_pol3_beta_2 2.61
PF07659DUF1599 1.74
PF00145DNA_methylase 1.74
PF07275ArdA 1.74
PF05869Dam 0.87
PF02945Endonuclease_7 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG0592DNA polymerase III sliding clamp (beta) subunit, PCNA homologReplication, recombination and repair [L] 2.61
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 1.74
COG4734Antirestriction protein ArdADefense mechanisms [V] 1.74


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A62.61 %
All OrganismsrootAll Organisms37.39 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004240|Ga0007787_10048103Not Available1900Open in IMG/M
3300005527|Ga0068876_10060866Not Available2288Open in IMG/M
3300005527|Ga0068876_10570339Not Available615Open in IMG/M
3300005581|Ga0049081_10018194All Organisms → Viruses → Predicted Viral2664Open in IMG/M
3300005581|Ga0049081_10032445Not Available1984Open in IMG/M
3300005581|Ga0049081_10097352All Organisms → Viruses → Predicted Viral1099Open in IMG/M
3300005805|Ga0079957_1043241All Organisms → Viruses → Predicted Viral2832Open in IMG/M
3300006637|Ga0075461_10010465All Organisms → Viruses → Predicted Viral3064Open in IMG/M
3300006802|Ga0070749_10198545All Organisms → Viruses → Predicted Viral1150Open in IMG/M
3300006917|Ga0075472_10039751All Organisms → Viruses → Predicted Viral2210Open in IMG/M
3300007363|Ga0075458_10002998Not Available5514Open in IMG/M
3300007541|Ga0099848_1160809Not Available826Open in IMG/M
3300007734|Ga0104986_1276Not Available12984Open in IMG/M
3300007960|Ga0099850_1218955Not Available743Open in IMG/M
3300007973|Ga0105746_1043839Not Available1393Open in IMG/M
3300008055|Ga0108970_10006988Not Available2948Open in IMG/M
3300008116|Ga0114350_1029693All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium2696Open in IMG/M
3300008116|Ga0114350_1077976Not Available1108Open in IMG/M
3300008117|Ga0114351_1026165All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.4492Open in IMG/M
3300008259|Ga0114841_1029635Not Available2808Open in IMG/M
3300008263|Ga0114349_1050644Not Available2001Open in IMG/M
3300008263|Ga0114349_1136234Not Available1002Open in IMG/M
3300008266|Ga0114363_1078957All Organisms → Viruses → Predicted Viral1232Open in IMG/M
3300008266|Ga0114363_1151770Not Available768Open in IMG/M
3300009450|Ga0127391_1014001All Organisms → Viruses → Predicted Viral1682Open in IMG/M
3300010354|Ga0129333_10125903Not Available2359Open in IMG/M
3300010354|Ga0129333_10256639All Organisms → Viruses → Predicted Viral1574Open in IMG/M
3300011115|Ga0151514_10473Not Available17412Open in IMG/M
3300012012|Ga0153799_1047224Not Available798Open in IMG/M
3300013004|Ga0164293_10520461Not Available782Open in IMG/M
3300013005|Ga0164292_10377328Not Available952Open in IMG/M
(restricted) 3300013122|Ga0172374_1257337Not Available623Open in IMG/M
(restricted) 3300013126|Ga0172367_10534794Not Available638Open in IMG/M
3300013372|Ga0177922_10772320Not Available701Open in IMG/M
(restricted) 3300014720|Ga0172376_10502408Not Available678Open in IMG/M
3300017788|Ga0169931_11030324Not Available506Open in IMG/M
3300020172|Ga0211729_11094226Not Available737Open in IMG/M
3300020183|Ga0194115_10055361All Organisms → Viruses → Predicted Viral2469Open in IMG/M
3300021961|Ga0222714_10130658Not Available1536Open in IMG/M
3300021961|Ga0222714_10199217All Organisms → Viruses → Predicted Viral1158Open in IMG/M
3300021962|Ga0222713_10065152All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.2718Open in IMG/M
3300021962|Ga0222713_10356237All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage914Open in IMG/M
3300021962|Ga0222713_10360032Not Available907Open in IMG/M
3300021962|Ga0222713_10783088Not Available534Open in IMG/M
3300021963|Ga0222712_10598153Not Available637Open in IMG/M
3300022198|Ga0196905_1113234Not Available716Open in IMG/M
3300022752|Ga0214917_10174952All Organisms → Viruses → Predicted Viral1095Open in IMG/M
3300023179|Ga0214923_10068401Not Available2567Open in IMG/M
3300023179|Ga0214923_10625212Not Available505Open in IMG/M
3300024512|Ga0255186_1031633Not Available712Open in IMG/M
3300025630|Ga0208004_1008724All Organisms → Viruses → Predicted Viral3454Open in IMG/M
3300025889|Ga0208644_1056029All Organisms → Viruses → Predicted Viral2152Open in IMG/M
3300025889|Ga0208644_1136942Not Available1143Open in IMG/M
3300027508|Ga0255072_1064859Not Available739Open in IMG/M
3300027529|Ga0255077_1098649Not Available552Open in IMG/M
3300027659|Ga0208975_1011945All Organisms → Viruses → Predicted Viral2964Open in IMG/M
3300027659|Ga0208975_1022017Not Available2084Open in IMG/M
3300027659|Ga0208975_1059759All Organisms → Viruses → Predicted Viral1155Open in IMG/M
3300027697|Ga0209033_1023555Not Available2459Open in IMG/M
3300027793|Ga0209972_10006186All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes8633Open in IMG/M
3300027793|Ga0209972_10024554All Organisms → Viruses → Predicted Viral3605Open in IMG/M
3300027804|Ga0209358_10400354All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage648Open in IMG/M
3300027805|Ga0209229_10385696Not Available610Open in IMG/M
3300027806|Ga0209985_10024995Not Available3647Open in IMG/M
3300031758|Ga0315907_10081636All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2787Open in IMG/M
3300031758|Ga0315907_10145353Not Available2011Open in IMG/M
3300031758|Ga0315907_10778426Not Available717Open in IMG/M
3300031857|Ga0315909_10039511All Organisms → Viruses → Predicted Viral4478Open in IMG/M
3300031857|Ga0315909_10074964All Organisms → Viruses → Predicted Viral3012Open in IMG/M
3300031857|Ga0315909_10076942Not Available2962Open in IMG/M
3300031857|Ga0315909_10094765Not Available2591Open in IMG/M
3300031857|Ga0315909_10186142All Organisms → Viruses → Predicted Viral1663Open in IMG/M
3300031857|Ga0315909_10876844Not Available557Open in IMG/M
3300031951|Ga0315904_10215292All Organisms → Viruses → Predicted Viral1872Open in IMG/M
3300031951|Ga0315904_10496333Not Available1078Open in IMG/M
3300031951|Ga0315904_10982950Not Available671Open in IMG/M
3300031951|Ga0315904_11459472Not Available506Open in IMG/M
3300031963|Ga0315901_10347180All Organisms → Viruses → Predicted Viral1210Open in IMG/M
3300032050|Ga0315906_10283950Not Available1501Open in IMG/M
3300032092|Ga0315905_10764262Not Available847Open in IMG/M
3300032093|Ga0315902_10530654All Organisms → Viruses → Predicted Viral1013Open in IMG/M
3300033978|Ga0334977_0257136All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage855Open in IMG/M
3300033978|Ga0334977_0550192Not Available521Open in IMG/M
3300033979|Ga0334978_0020817All Organisms → Viruses → Predicted Viral3468Open in IMG/M
3300033979|Ga0334978_0322888Not Available736Open in IMG/M
3300033981|Ga0334982_0022050All Organisms → Viruses → Predicted Viral3700Open in IMG/M
3300033981|Ga0334982_0028915All Organisms → Viruses → Predicted Viral3172Open in IMG/M
3300033993|Ga0334994_0014109All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5422Open in IMG/M
3300033996|Ga0334979_0497155Not Available661Open in IMG/M
3300034019|Ga0334998_0073884All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2319Open in IMG/M
3300034021|Ga0335004_0063655Not Available2549Open in IMG/M
3300034021|Ga0335004_0456648Not Available708Open in IMG/M
3300034023|Ga0335021_0324945Not Available819Open in IMG/M
3300034064|Ga0335001_0018396Not Available4122Open in IMG/M
3300034064|Ga0335001_0176574Not Available1199Open in IMG/M
3300034071|Ga0335028_0024769Not Available4162Open in IMG/M
3300034073|Ga0310130_0196393Not Available627Open in IMG/M
3300034096|Ga0335025_0029927All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.3704Open in IMG/M
3300034096|Ga0335025_0048399Not Available2786Open in IMG/M
3300034096|Ga0335025_0474139Not Available635Open in IMG/M
3300034101|Ga0335027_0012117All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7446Open in IMG/M
3300034101|Ga0335027_0080512All Organisms → Viruses → Predicted Viral2535Open in IMG/M
3300034103|Ga0335030_0012845All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6403Open in IMG/M
3300034103|Ga0335030_0069326Not Available2610Open in IMG/M
3300034105|Ga0335035_0213349Not Available1182Open in IMG/M
3300034106|Ga0335036_0106300Not Available2052Open in IMG/M
3300034112|Ga0335066_0050677Not Available2763Open in IMG/M
3300034112|Ga0335066_0274453Not Available964Open in IMG/M
3300034112|Ga0335066_0544290Not Available609Open in IMG/M
3300034112|Ga0335066_0587791Not Available577Open in IMG/M
3300034116|Ga0335068_0007480All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7063Open in IMG/M
3300034122|Ga0335060_0163149Not Available1291Open in IMG/M
3300034355|Ga0335039_0032106Not Available3226Open in IMG/M
3300034356|Ga0335048_0191816All Organisms → cellular organisms → Bacteria1133Open in IMG/M
3300034374|Ga0348335_077445All Organisms → cellular organisms → Bacteria1134Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater35.65%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater14.78%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous9.57%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake6.96%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton6.96%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water6.09%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic5.22%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.35%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater2.61%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.74%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.87%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.87%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.87%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.87%
Meromictic PondEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond0.87%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water0.87%
EstuaryHost-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary0.87%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004240Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SNEnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006917Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300007363Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNAEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007734Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015JanEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008055Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393Host-AssociatedOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008117Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008259Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NAEnvironmentalOpen in IMG/M
3300008263Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTREnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300009450Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UDEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300011115Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016MayEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013122 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3mEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300014720 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35mEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300024512Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_0hEnvironmentalOpen in IMG/M
3300025630Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027508Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8hEnvironmentalOpen in IMG/M
3300027529Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8hEnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027697Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027793Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027804Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027806Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300033978Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002EnvironmentalOpen in IMG/M
3300033979Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034019Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049EnvironmentalOpen in IMG/M
3300034021Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034064Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034073Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XLEnvironmentalOpen in IMG/M
3300034096Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034103Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119EnvironmentalOpen in IMG/M
3300034105Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034112Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034122Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181EnvironmentalOpen in IMG/M
3300034355Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135EnvironmentalOpen in IMG/M
3300034356Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152EnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0007787_1004810313300004240Freshwater LakeVRDIFELSFRWQDGFIQVLIYALVIYLGLVILSKITDKREREGKR*
Ga0068876_1006086623300005527Freshwater LakeVGYQGERGRESVKDIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGK*
Ga0068876_1057033923300005527Freshwater LakeMSDLFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKRKGEGR*
Ga0049081_10018194103300005581Freshwater LenticVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGK*
Ga0049081_1003244573300005581Freshwater LenticMGDLFELSFRWQDGAAQVIIYALVIYLGLVIISKIS
Ga0049081_1009735223300005581Freshwater LenticVSDIFELSFRWQDGAVQVLIYALVIYLGLVILSKITDKREREGKK*
Ga0079957_1043241103300005805LakeVSDLFELSFRWQDGAVQVLIYCAIITGGLYLLSKINIKEREGDNE*
Ga0075461_1001046583300006637AqueousVRDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNG*
Ga0070749_1019854533300006802AqueousVRDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKRERGR*
Ga0075472_1003975143300006917AqueousVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGKK*
Ga0075458_1000299853300007363AqueousMRGGEQVRDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNG*
Ga0099848_116080933300007541AqueousVSDIFELSFRWQDGAIQVIIYALAIYLGLVAISKITDKREREG*
Ga0104986_1276133300007734FreshwaterVGYQGERGRESVKDIFELSFRWQDGAVQVIIYALVIYLGLVIISKITDKRKREGK*
Ga0099850_121895523300007960AqueousMRGGEQVRDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREG*
Ga0105746_104383923300007973Estuary WaterMGDLFELSFRWQDGAAQVIIYALVIYLGLVIISKITDKRKGKR*
Ga0108970_1000698863300008055EstuaryMGDIFELSFRWQDGFIQFLIYCAIITGGLYLLSKIEIKEREGDND*
Ga0114350_102969363300008116Freshwater, PlanktonVGYQGERGRESVKDIFELSFRWQDGAAQVIIYALVIYLGLVIISKISDKRKGKR*
Ga0114350_107797643300008116Freshwater, PlanktonVGYQGERGRESVSDIFELSFRWQDGAVQVIIYALVIYLGLVIISKITDKREGK*
Ga0114351_102616563300008117Freshwater, PlanktonVSDIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGKR*
Ga0114841_102963573300008259Freshwater, PlanktonMGDLFELSFRWQDGAAQVIIYALVIYLGLVIISKISDKRKR*
Ga0114349_105064453300008263Freshwater, PlanktonVREIFELSFRWQDGAIQVIIYALVIYLGLVIISKISDKREGK*
Ga0114349_113623413300008263Freshwater, PlanktonVGYQGERGRESVREIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGKR*
Ga0114363_107895723300008266Freshwater, PlanktonMGDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGDNERN*
Ga0114363_115177023300008266Freshwater, PlanktonMGDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKRERGR*
Ga0127391_101400143300009450Meromictic PondMSDIFELSFRWQDGFIQVLIYCAIIIGGLYLLSKINIKEREGDNE*
Ga0129333_10125903103300010354Freshwater To Marine Saline GradientVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREG
Ga0129333_1025663943300010354Freshwater To Marine Saline GradientVRDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKK*
Ga0151514_10473343300011115FreshwaterVGYQGERGRESVKDIFELSFRWQDGAVQVIIYALVIYLGLVIISKITDKRKREGKR*
Ga0153799_104722443300012012FreshwaterSMRGGERVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGKR*
Ga0164293_1052046133300013004FreshwaterVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGKR*
Ga0164292_1037732833300013005FreshwaterVSDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGKK*
(restricted) Ga0172374_125733723300013122FreshwaterVCRERGGESVSDLFELSFRWQDGAIQIIIYAAVIYLGLVVISKITDKREGKR*
(restricted) Ga0172367_1053479423300013126FreshwaterMGDLFEISFRWQDGAVQVIIYAAVIYLGLVVISKISDKREGKR*
Ga0177922_1077232023300013372FreshwaterVGYQGERGRESVREIFELSFRWQDGAIQVIIYALVIYLGLVIISKITDKREGKR*
(restricted) Ga0172376_1050240823300014720FreshwaterMGDLFELSFRWQDGAVQVIIYAAVIYLGLVIISKISDKREGKR*
Ga0169931_1103032423300017788FreshwaterMGDLFELSFRWQDGAVQVIIYALVIYLGLVVISKITDKRKRER
Ga0211729_1109422643300020172FreshwaterMGDIFELSFRWQDGAIQVIIYALVIYLGLVIISKISDKRKR
Ga0194115_1005536153300020183Freshwater LakeVSDLFELSFRWQDGAVQVIIYAIVIYLGLVIATSLTDKRERKKDENA
Ga0222714_1013065813300021961Estuarine WaterVRDLFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKK
Ga0222714_1019921763300021961Estuarine WaterVRDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKK
Ga0222713_1006515283300021962Estuarine WaterVSDLFELSFRWQDGAVQVIIYALVIYLGLVIISKITDKREREGKK
Ga0222713_1035623743300021962Estuarine WaterVRDIFELSFRWQDGFVQVLIYALVIYLGLVIISKITDKREREGKR
Ga0222713_1036003243300021962Estuarine WaterMGDLFELSFRWQDGAAQVIIYALVIYLGLVIISKISDKRERKK
Ga0222713_1078308823300021962Estuarine WaterVRDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKR
Ga0222712_1059815343300021963Estuarine WaterVRDLFELSFRWQDGFIQVLIYALVIYLGLVILSKITDKR
Ga0196905_111323433300022198AqueousVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKRERGR
Ga0214917_1017495243300022752FreshwaterMRGGEQVKDIFELSFRWQDGFIQVLIYALVIYLGLVILSKITDKREREGK
Ga0214923_1006840143300023179FreshwaterVKDIFELSFRWQDGFIQVLIYALVIYLGLVILSKITDKREREGK
Ga0214923_1062521233300023179FreshwaterVRDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGDNG
Ga0255186_103163313300024512FreshwaterVRDIFELSFRWQDGFIQVLIYVLVIYLGLVIISKITD
Ga0208004_100872483300025630AqueousVRDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNG
Ga0208644_105602953300025889AqueousMRGGEQVRDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNG
Ga0208644_113694253300025889AqueousVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGKK
Ga0255072_106485943300027508FreshwaterFELSFRWQDGFIQFLIYALVIYLGLVIISKITDKREREGKR
Ga0255077_109864913300027529FreshwaterVRDLFELSFRWQDGFIQFLIYALVIYLGLVIISKITDK
Ga0208975_101194533300027659Freshwater LenticVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGK
Ga0208975_102201713300027659Freshwater LenticMGDLFELSFRWQDGAAQVIIYALVIYLGLVIISKI
Ga0208975_105975923300027659Freshwater LenticVRGGERVSDIFELSFRWQDGAVQVLIYALVIYLGLVILSKITDKREREGKK
Ga0209033_102355523300027697Freshwater LakeVRDIFELSFRWQDGFIQVLIYALVIYLGLVILSKITDKREREGKR
Ga0209972_10006186153300027793Freshwater LakeVKDIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGK
Ga0209972_1002455493300027793Freshwater LakeMSDLFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKRKGEGR
Ga0209358_1040035423300027804Freshwater LakeMSDLFELSFRWQDGAVQVIIYALVIYLGLVIISKMSDKRKGEGR
Ga0209229_1038569623300027805Freshwater And SedimentVGYQGEKGRESVRDIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKRKR
Ga0209985_1002499583300027806Freshwater LakeVGYQGERGRESVKDIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGK
Ga0315907_1008163653300031758FreshwaterVGYQGERGRESVREIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGKR
Ga0315907_1014535323300031758FreshwaterVREIFELSFRWQDGAIQVIIYALVIYLGLVIISKISDKREGK
Ga0315907_1077842643300031758FreshwaterLSFRWQDGAVQVIIYALAIWLGLVIISKISDKRKRER
Ga0315909_1003951143300031857FreshwaterVSDIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGKR
Ga0315909_1007496453300031857FreshwaterVSDIFELSFRWQDGAVQVIIYALAIWLGLVIISKISDKRKRER
Ga0315909_1007694273300031857FreshwaterMGDLFELSFRWQDGAAQVIIYALVIYLGLVIISKISDKRKR
Ga0315909_1009476533300031857FreshwaterVSDIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGK
Ga0315909_1018614233300031857FreshwaterMGDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGDNERN
Ga0315909_1087684413300031857FreshwaterVRDIFELSFRWQDGAVQVLIYALVIYLGLVILSKITDKREREGKR
Ga0315904_1021529253300031951FreshwaterVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGKR
Ga0315904_1049633333300031951FreshwaterVSDMFELSFRWQDGFIQVLIYALVIYLGLVILSKITDKREREGKR
Ga0315904_1098295033300031951FreshwaterMREGGEQVRDIFELSFRWQDGFIQVLIYALVIYLGLVILSKITDKKEREGK
Ga0315904_1145947213300031951FreshwaterVGYQGERGRESVSDIFELSFRWQDGAVQVIIYALVIYLGLVIISKITDKREGK
Ga0315901_1034718053300031963FreshwaterVSDMFELSFRWQDGFIQVLIYALVIYLGLVILSKITDKREREGK
Ga0315906_1028395013300032050FreshwaterMGDIFELSFRWQDGFIQVLIYCAIITGGLYLLSKIQIKERE
Ga0315905_1076426223300032092FreshwaterVGYQGERGRESVREIFELSFRWQDGAVQVIIYALVIYLGLVIISKITDKREGK
Ga0315902_1053065413300032093FreshwaterVGYQGEKGRESVRDIFELSFRWQDGAVQVIIYALVIYLGLVIISKITDKREGK
Ga0334977_0257136_45_1943300033978FreshwaterVSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGDNEGKK
Ga0334977_0550192_336_4733300033978FreshwaterMSDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKK
Ga0334978_0020817_2419_25443300033979FreshwaterMFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGK
Ga0334978_0322888_409_5493300033979FreshwaterMSDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGDNE
Ga0334982_0022050_1919_20683300033981FreshwaterMSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGDNEGKK
Ga0334982_0028915_773_9103300033981FreshwaterMRDIFELSFRWQDGAVQVLIYCAIITGGLYLLSKINIKEREGDNE
Ga0334994_0014109_1453_15903300033993FreshwaterMSDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGKR
Ga0334979_0497155_356_5353300033996FreshwaterMREGGKRVSDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNEYKPDRP
Ga0334998_0073884_20_1573300034019FreshwaterMSDIFELSFRWQDGAVQVLIYCAIITGGLYLLSKINIKEREGDNE
Ga0335004_0063655_2384_25213300034021FreshwaterMRDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKK
Ga0335004_0456648_8_1453300034021FreshwaterMSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGKK
Ga0335021_0324945_335_4693300034023FreshwaterMGDIFELSFRWQDGAVQVLIYALVIYLGLVILSKITDKREREGK
Ga0335001_0018396_2133_22703300034064FreshwaterMRDIFELSFRWQDGAVQVLIYALVIYLGLVILSKITDKREREGKK
Ga0335001_0176574_837_9773300034064FreshwaterMSDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNE
Ga0335028_0024769_2225_23623300034071FreshwaterMGDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKK
Ga0310130_0196393_378_5363300034073Fracking WaterVYRRGKVKDLFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGDNG
Ga0335025_0029927_483_6203300034096FreshwaterMSDIFELSFRWQDGLVQVIIYALVIYLGLVIISKITDKREREGKR
Ga0335025_0048399_2616_27863300034096FreshwaterMREGGKRVSDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNEYKPD
Ga0335025_0474139_1_1323300034096FreshwaterSDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGE
Ga0335027_0012117_4180_43173300034101FreshwaterMRDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKR
Ga0335027_0080512_1123_12723300034101FreshwaterMSDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNEGKK
Ga0335030_0012845_4206_43613300034103FreshwaterMGDIFELSFRWQDGFVQFLIYCAIITGGLYLLSKIQIKEREGDNEYKPNKP
Ga0335030_0069326_667_8043300034103FreshwaterMGDIFELSFRWQDGFIQFLIYALVIYLGLVIISKITDKREREGKK
Ga0335035_0213349_866_10003300034105FreshwaterMSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGK
Ga0335036_0106300_142_2793300034106FreshwaterMRDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGKR
Ga0335066_0050677_1864_20103300034112FreshwaterMSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGDNEGR
Ga0335066_0274453_3_1223300034112FreshwaterMRDLFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKRE
Ga0335066_0544290_133_2673300034112FreshwaterMSDIFELSFRWQDGLVQVLIYALVIYLGLVILSKITDKREREGK
Ga0335066_0587791_373_5103300034112FreshwaterMSDLFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKK
Ga0335068_0007480_1408_15453300034116FreshwaterMSDIFELSFRWQDGAVQVLIYALVIYLGLVILSKITDKREREGKR
Ga0335060_0163149_651_7883300034122FreshwaterMSDIFELSFRWQDGAVQVLIYALVIYLGLVILSKITDKREREGKK
Ga0335039_0032106_341_5203300034355FreshwaterMREGGKRVSDIFELSFRWQDGLVQVLIYALVIYLGLVIISKITDKREREGDNEYKPDRA
Ga0335048_0191816_263_3973300034356FreshwaterMGDIFELSFRWQDGFVQFLIYALVIYLGLVIISKITDKREREGK
Ga0348335_077445_3_1253300034374AqueousMSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKRER


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.