Scaffold Ga0209086_10020424

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10020424
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4165
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008245	Metagenome / Metatranscriptome	336	N
F038675	Metagenome / Metatranscriptome	165	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100204241	F038675	N/A	MKLYQSHPWLYRRYIVQKKTVTEIAIECAVSPMTIQRYLDQFGLIKKR
Ga0209086_100204245	F008245	GGA	MENKSDSKNTLELISDITEFNDLHEFMKDEHLDKALAIVVKLLMNPDVPSAKAPHLIIELQAMSTKFAVMSSVYSTIMKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS
Ga0209086_100204247	F071247	GGAGG	MGSNNKIPFNPTVIKNGRIVRIRKDGSIKADLGLYKPKKKTDK