Scaffold Ga0209296_1000553

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000553
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32594
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (83.75%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F005705	Metagenome / Metatranscriptome	392	Y
F009334	Metagenome / Metatranscriptome	319	Y
F010245	Metagenome / Metatranscriptome	306	Y
F011276	Metagenome	292	Y
F034037	Metagenome / Metatranscriptome	175	Y
F068748	Metagenome / Metatranscriptome	124	Y
F072324	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100055330	F010245	N/A	MTKRTARRDSNYIIYAATHNGQSYIGLTRKGSVSVAKAVKERWRKHISRARHEDRDWELYRYIKSGNWTDWAHEVICVIRGRAEAYAYERELVKLYRTELNDQYL
Ga0209296_100055335	F072324	AGGAG	MLEITKIGENATYACNNDVKNCEAIVFAESVRTGRTMLQVIRYVLDEDDSDTNLLCACETLEEQIELAYKSKHIVQYLDEEMYKYSK
Ga0209296_100055343	F068748	AGG	MITPDTLKTLTTFTAPALTRAAKDAGYKGPAFSSCKFLGITNGGQFCYMAVFLCKGGTDSTKVFLTYTGSRVIVDYHLTELA
Ga0209296_100055344	F009334	AGGAG	MKTAKVDGQTVTIGDVVCFKSDVEQSGTIIDIKQSYSGTSLTLESKYGFHGDYIGGQEITTELARDCWVEG
Ga0209296_100055348	F005705	AGGAG	MKIVIKVPKQIRAHIVLFCKETPFKQKRVESKVKYKRQPKHKGREL
Ga0209296_100055367	F000354	GGAG	MANINYDNFASFDINECCDHFDSEKPSNWKKINKFIVADGQEYAHIMESEFDFEDTGAGEYEAFQAGVKYALTKMNIAFEAAAVDLQVCEVDLVESMGFVLVRADDEPEDFVKRVLKKPVLMVDSWV
Ga0209296_100055374	F034037	N/A	MPTYPTWDYVPVLHNFEHVAAVPWPGRAGEQLDWIMGVHDVEQWLQSYVGSKYQRWAWNMGTEVYQVSVAFKYAKHRTLFLLEWA
Ga0209296_10005538	F011276	GGAG	MIKGLMGNQGINVSGGNTSLPYVGPNANNPMTGMLRVNGTELEVFNGSSWQQLATSYATVSLDQDTQDLLQWARAQRTMALNRLTLAQNNPALMKILERIKKAEDDFELLSKFVEYDSKI