NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1001217

Scaffold Ga0209596_1001217


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1001217 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22549
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (92.68%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003379Metagenome / Metatranscriptome490Y
F004840Metagenome / Metatranscriptome421Y
F006744Metagenome / Metatranscriptome365Y
F063685Metagenome / Metatranscriptome129Y
F092052Metagenome / Metatranscriptome107Y
F093318Metagenome / Metatranscriptome106Y
F093873Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100121720F093318AGTAGGMQIQYVSKYIALSEEGLVPRLECPMDQGPLFPNQDGEDKVFIYCLSCEYKKFLGTKDYDDIVRAVENAR
Ga0209596_100121721F092052GGCGGMLDECKNGQCACEQEENFFHVKVIPQNSAKISAAGEESFSSYEFEATTLLEKDSMGREIFWNDMGRP
Ga0209596_100121723F003379AGAAGMKKIQRKTKSISALVMLIATAILSGVALSKFLKWAGQMEIFDFDLDEDIDKEDL
Ga0209596_100121727F093873AGGAMFSLNYTVGLSSSTCLVPSEEYANEFLDLVAKTRVIDTVTLTELPNYKPSKRVVFATTRSWE
Ga0209596_100121731F063685GGAMKIELDSFGFMFNTEWAYVSLSWELLIASVLLGVAYKFYKIRKAK
Ga0209596_100121738F006744AGGMNLDEFKKHVIAQREESKAKALSVLSATITIQPNERENLK
Ga0209596_100121740F004840N/AMYKITCAYDSNAPHWSAEYENEFGAWENFFLFIDWGFADEYSTVNLYTPTGKCYTKVFYRNGMVAVK
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