Scaffold Ga0209596_1000050

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000050
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100398
• Total Scaffold Genes: 156
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 119 (76.28%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002935	Metagenome	519	Y
F003688	Metagenome / Metatranscriptome	473	Y
F009885	Metagenome / Metatranscriptome	311	Y
F017301	Metagenome / Metatranscriptome	241	Y
F021109	Metagenome	220	Y
F024789	Metagenome / Metatranscriptome	204	Y
F026557	Metagenome / Metatranscriptome	197	Y
F030990	Metagenome / Metatranscriptome	183	Y
F034573	Metagenome	174	Y
F053256	Metagenome	141	Y
F063707	Metagenome / Metatranscriptome	129	Y
F070856	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_1000050103	F063707	AGTAGG	MPKCLDCNNTTRFWYQELGNKLGIYNEDGTLDDVEDDYYDEVEGGTCAECESANIEGKL
Ga0209596_1000050109	F002935	AGGA	MRERTTGYIGNILDGKKLAKIANKIYKAQYNSVSECTIDNLLLIELEEKNVFGDSKYAVVCTEGVGWEQDSYGCLEIPTNVGAMGNWNGRVFISVEVIGQCLTGQTQDISKYIRTFGDRLDNNCYLWQCKMSVLPSTISV
Ga0209596_1000050117	F002515	N/A	MKTRKNPEELRRLMELRRSNAASAVPSKKNYSRKNKCQSLMLELKKESESPND
Ga0209596_1000050126	F026557	AGG	MINSVMTIPCEECHSTGLIFFGDNDNFDTETCECDFGIEQDLYFFNNNN
Ga0209596_1000050138	F021109	AGG	MNTLNRIQTEQTIARHEAHEKAMTQSPWIRESVQAYRTSTPEQLAQVEAILRKRGQIK
Ga0209596_1000050142	F009885	N/A	MYNSVIMTATDWAQFILALLSIGAIIISAIRWYIKVQVKPIADAVEDIRAETKTNGGTSMRDEIKSIKLEQENAREKRKATSDKLDHMYEVLLDYVSRSK
Ga0209596_1000050146	F030990	GGAG	MPDVVLSNDELTVLSGPEVIELLVDIGPTGTRGSKFFVGVGDPNSNGSLDPILSDLYINSATGSEYGYLYQYVSEPGGETWIEVLKIATSIYSKKHTVTFASGTSSDIGSGTILIPITDITDVTGLTAENFSAQYSIVNANPLASSIFSIEISGLDLVINLQASEYDGTWGAFDAETSVHLFISVVT
Ga0209596_1000050152	F070856	N/A	MATYRNPNETSLDPQPTAPATYSIGNIPPLVNWTCVVGDSASFRIYVEDDEGEELDYDTTSTGDITGWDIKGEFRRYSDNVGDDILFTIYPDQTEFDGPGEFTVTLSPSQSKVLRTGDVFDIQLRDDVLSRVWTVCQGEMIMIGEVTEQDEVS
Ga0209596_10000503	F053256	AGGAG	MTQEIQITHLEARQVEVNSYAANVTNYKALLATLDGDWDADLIHLKGIESQDAARQCPMDRLERLAILQQFDQVTNLLKTEIVEGAKAAAILAVMQSQVN
Ga0209596_100005041	F000264	GGA	MLMTMMLLIQNLTNNNMTAKLYTSEVFMRKRYLVDKKTPEEIAKECGASVETIYVYLAKFNLRKSKR
Ga0209596_100005068	F003688	N/A	MRRAFHSILPPKNFKVELIDNEHFLTIKLDEYVFAKMVHDDKIQALQYVLNAKKALEMEGAIVLVTREAIK
Ga0209596_100005072	F017301	AGGAGG	MNTEQLKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAAIAPVAIRAINPNDKAFGLLPDAKAVGMALKAAKAPAKKVAKKAAPKK
Ga0209596_100005086	F024789	GGA	MKEPKIIQMDWRSLGYWPVWKNGKKVWVPKNDESFNKDSKN
Ga0209596_100005099	F034573	GAGG	MYKITRNNVATNEEKIAKKISVLLSDFTIDLEKVGYYLARATPYLLFCRSLEVLESAQFQKDTIEQQRIGYDNDRLFY