Scaffold Ga0209297_1000085

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000085
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64849
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (89.25%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F004759	Metagenome / Metatranscriptome	424	Y
F005703	Metagenome / Metatranscriptome	392	Y
F008879	Metagenome / Metatranscriptome	326	Y
F009203	Metagenome / Metatranscriptome	321	Y
F045701	Metagenome	152	Y
F057982	Metagenome	135	N
F074794	Metagenome	119	N
F075693	Metagenome	118	Y
F082396	Metagenome / Metatranscriptome	113	Y
F088545	Metagenome	109	Y
F088775	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100008515	F057982	GGAGG	MTKYRITYSDGCFADWDAMQKDLAWGYRWGIFLYAVRLNIGAWRAGHKSFKYWLYVLRRKPKITREKA
Ga0209297_100008528	F088545	AGGGGG	MKVRQIRQRAKTHYISEEGFKFLRGAIGKRCRTYEAGCAVCDEWRFRDEHGRFVYNFEELRKYMDITEGEAE
Ga0209297_100008530	F088775	AGG	MQKDYKKCAKCGTEKPLAQFKRRLSRAQMQARGMKGAVLMTISSKNCKDCQPKRKPPRKQTPKQLHNMVVSGDIKEARMLEILAERQRMARLVMSKARYEAWVDQWRKELKAVLSPMTYEIHKVRAQIRYAEEVNNDEYLKLLEKYLSVLTREKSRILLDYEADPHKYKNEKRNWWDLVSDFGVESLRDRWMSIRKEDKASMKVPELLARRK
Ga0209297_100008535	F074794	GGAG	VQFSPDDTGLEDFVTIAAVDTAELLSAQIATAQWLEELGATPDEKIHTETQTHLARDAFKMIVSDQDTDEQKTKLLQLKTPAAVRHITGMLTAYDWEFVQMAKELRGYTVAKLFEETQSPNANIRLKALGLLGKVTEVGLFTDKIEIKKTDLTDEEIDRKLKEKLAKFMGVTDAEPIEDIEINESRNEPERTDAQPD
Ga0209297_10000854	F001629	GGAGG	MILNQGKLADGLVDDLLAAVHKYDESLYMATVIGVLELVKQQLINDSIRGDDDD
Ga0209297_100008548	F009203	AGG	MTEHTDNVKNVLDFVAIFSTFGAFLEMFNPLFALIGAVVGAMRIYEMATGKDFYKLLSKKKADDAEHE
Ga0209297_10000855	F075693	GGAG	MMDEKAIQKAWNMMSMHNIELLLENEQLKKQLMRQSLWYAIKRAINIWRGKE
Ga0209297_100008553	F004759	AGGAG	MAEDKKDLAQDKKMIKSAVGKHEKNMHPGKPMTKLKAGGKTNGDMLKYGRNMAKVMNQRSVGRGG
Ga0209297_100008558	F008879	AGG	MATFKKGDTVKLIGVVPLGPVIGMRMDEDGNVSYLIEWTDVESHVQQRWFAEAELAAA
Ga0209297_100008565	F082396	GAG	MTHRIEVNVQTGETTFIEYTPEEQATYDAAVAAQQAEQQAQPPAEQGVQT
Ga0209297_100008568	F005703	GGGGG	MGWIAALILVGLMLPLNAMLFMDILEAKHEVKAQVEKVEKLRRELEQKEREK
Ga0209297_100008574	F045701	N/A	MMPPVREKIYEDADARVLCDYILNRTKVTLHLNFNPGAWSPAKFKRYKGIFAEQILPFLRDKSYKEVYATPFENDVKAQKLIAMFGFKELSRKQGLVVMKRGV