Metagenome Family F075693

Basic Information
Family ID	F075693
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	52 residues
Representative Sequence	MDKEAIQKAWNLMSMHNSELLLENEQLKKQLMRRSLWYAIKRAIRIWRGKE
Number of Associated Samples	77
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	86.44 %
% of genes near scaffold ends (potentially truncated)	19.49 %
% of genes from short scaffolds (< 2000 bps)	70.34 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (38.983 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (29.661 % of family members)
Environment Ontology (ENVO)	Unclassified (80.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (88.136 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1TBL_comb48_EPIDRAFT_10612314 2RCM37_13502291 3JGI24028J26656_10198482 4JGI24028J26656_10221183 5B570J29032_1097511195 6B570J40625_1008520694 7B570J40625_1009316433 8JGI25908J49247_100279924 9JGI25908J49247_101169622 10JGI26470J50227_10739672 11Ga0065167_10197552 12Ga0007792_102764881 13Ga0068876_100022808 14Ga0068872_106590992 15Ga0049081_1000053815 16Ga0049081_100324274 17Ga0049081_100727216 18Ga0049081_100814994 19Ga0049081_101410675 20Ga0049081_101589162 21Ga0049081_102830852 22Ga0049080_1000015718 23Ga0049080_100884404 24Ga0049082_101163553 25Ga0049084_101448513 26Ga0104986_174930 27Ga0114340_10020941 28Ga0114343_10274975 29Ga0114841_11059565 30Ga0114364_100629410 31Ga0114962_100666512 32Ga0114962_104712533 33Ga0114980_105125902 34Ga0114963_1000573119 35Ga0114968_107160001 36Ga0114977_100056513 37Ga0114977_101932863 38Ga0114959_101374001 39Ga0114964_100057802 40Ga0114964_104415374 41Ga0133913_121057501 42Ga0133913_135898774 43Ga0139557_10783203 44Ga0151514_1023010 45Ga0153800_10090032 46Ga0157497_10299693 47Ga0164293_101615214 48Ga0136642_11898192 49Ga0177922_103677521 50Ga0177922_103920873 51Ga0177922_104740515 52Ga0177922_109882891 53Ga0119960_10025253 54Ga0181338_10093436 55Ga0181350_10228913 56Ga0181352_10159665 57Ga0181352_10461311 58Ga0181344_10098733 59Ga0181344_10293646 60Ga0181344_11129971 61Ga0181344_11417222 62Ga0181344_12155932 63Ga0181343_11398761 64Ga0181343_11774913 65Ga0181343_11830722 66Ga0181358_11265684 67Ga0181357_100319114 68Ga0181357_10409471 69Ga0181357_10818324 70Ga0181357_12438672 71Ga0181357_12455961 72Ga0181349_10625755 73Ga0181346_13360712 74Ga0181348_11865861 75Ga0181355_13424361 76Ga0181359_10161013 77Ga0181359_10798604 78Ga0181359_11527163 79Ga0208600_10496771 80Ga0214206_10000832 81Ga0214166_100816410 82Ga0194048_100011006 83Ga0194048_100637897 84Ga0181354_10880625 85Ga0181351_10622374 86Ga0181351_12332403 87Ga0214917_1000082631 88Ga0214919_105943703 89Ga0208103_10159473 90Ga0208974_10023644 91Ga0208960_10506303 92Ga0208975_10079082 93Ga0208975_10262074 94Ga0208975_11628421 95Ga0208975_11865862 96Ga0209442_10257376 97Ga0209297_10000855 98Ga0209297_13082952 99Ga0209085_100139424 100Ga0209972_1002718413 101Ga0209990_1000082148 102Ga0247722_102758402 103Ga0304729_100089031 104Ga0304729_10517656 105Ga0304728_10921361 106Ga0315909_104935051 107Ga0315909_109994741 108Ga0315905_100832627 109Ga0334994_0000997_16278_16457 110Ga0334979_0072282_244_405 111Ga0335005_0512385_440_622 112Ga0334995_0000868_16563_16718 113Ga0335012_0218844_67_228 114Ga0335012_0481750_151_309 115Ga0335029_0775711_1_153 116Ga0335036_0077905_506_661 117Ga0335036_0083208_120_278 118Ga0335036_0238877_223_378
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1TBL_comb48_EPIDRAFT_10612314 2B570J40625_1009316433 3JGI25908J49247_100279924 4Ga0068876_100022808 5Ga0114962_100666512 6Ga0114959_101374001 7Ga0114964_104415374 8Ga0181352_10461311 9Ga0181343_11774913 10Ga0181358_11265684 11Ga0181357_100319114 12Ga0181351_12332403 13Ga0247722_102758402
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. 1JGI25908J49247_101169622 2TBL_comb48_EPIDRAFT_10612314 3RCM37_13502291 4B570J29032_1097511195 5B570J40625_1008520694 6JGI25908J49247_100279924 7Ga0065167_10197552 8Ga0007792_102764881 9Ga0049081_100727216 10Ga0114364_100629410 11Ga0114962_100666512 12Ga0114963_1000573119 13Ga0114977_101932863 14Ga0133913_121057501 15Ga0133913_135898774 16Ga0157497_10299693 17Ga0136642_11898192 18Ga0181344_10098733 19Ga0181344_10293646 20Ga0181344_11417222 21Ga0181344_12155932 22Ga0181343_11398761 23Ga0181349_10625755 24Ga0181346_13360712 25Ga0214917_1000082631 26Ga0247722_102758402 27Ga0335036_0083208_120_278
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.96% β-sheet: 0.00% Coil/Unstructured: 43.04%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF12705	PDDEXK_1	5.93
PF02195	ParBc	5.08
PF04851	ResIII	1.69
PF13203	DUF2201_N	1.69
PF01870	Hjc	1.69
PF03118	RNA_pol_A_CTD	1.69
PF11753	DUF3310	1.69
PF16786	RecA_dep_nuc	1.69
PF00476	DNA_pol_A	0.85
PF08774	VRR_NUC	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	1.69
COG1591	Holliday junction resolvase Hjc, archaeal type	Replication, recombination and repair [L]	1.69
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.85
COG3926	Lysozyme family protein	General function prediction only [R]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.02 %
Unclassified	root	N/A	38.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	7.63 %
Unclassified	root	N/A	38.98 %
Viruses	superkingdom	All Organisms → Viruses	53.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.63 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	27.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.42 %
Unclassified	root	N/A	38.98 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	27.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.78 %
Unclassified	root	N/A	38.98 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.24 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.42 %
Unclassified	root	N/A	38.98 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	27.97 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.69 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	27.97 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.42 %
Unclassified	root	N/A	38.98 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.85 %

Name	Rank	Taxonomy	Distribution
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.69 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	4.24 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	27.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.42 %
Unclassified	root	N/A	38.98 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Comamonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas	0.85 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	4.24 %
Luteimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.42 %
Unclassified	root	N/A	38.98 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27.97 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.85 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.42 %
Unclassified	root	N/A	38.98 %
unclassified Comamonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas → unclassified Comamonas	0.85 %
unclassified Geobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae	4.24 %
unclassified Luteimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas	0.85 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.85 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27.97 %

Name	Rank	Taxonomy	Distribution
Comamonas sp. B21-038	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas → unclassified Comamonas → Comamonas sp. B21-038	0.85 %
Geobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	4.24 %
Luteimonas sp. S4-F44	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas → Luteimonas sp. S4-F44	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.42 %
Unclassified	root	N/A	38.98 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27.97 %
Variovorax sp. PAMC 28711	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. PAMC 28711	0.85 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000439\|TBL_comb48_EPIDRAFT_1061231	All Organisms → Viruses → Predicted Viral	1254	Open in IMG/M
3300001850\|RCM37_1350229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas → Luteimonas sp. S4-F44	545	Open in IMG/M
3300002091\|JGI24028J26656_1019848	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	675	Open in IMG/M
3300002091\|JGI24028J26656_1022118	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	620	Open in IMG/M
3300002408\|B570J29032_109751119	All Organisms → Viruses → Predicted Viral	1207	Open in IMG/M
3300002835\|B570J40625_100852069	Not Available	794	Open in IMG/M
3300002835\|B570J40625_100931643	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300003277\|JGI25908J49247_10027992	All Organisms → Viruses → Predicted Viral	1616	Open in IMG/M
3300003277\|JGI25908J49247_10116962	Not Available	633	Open in IMG/M
3300003375\|JGI26470J50227_1073967	Not Available	538	Open in IMG/M

Showing 1 to 10 of 118 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.15%
Terrestrial	Environmental → Terrestrial	0.85%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.85%
Freshwater	Environmental → Aquatic → Freshwater	99.15%

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	0.85%
Lake	Environmental → Aquatic → Freshwater → Lake	38.14%
Lentic	Environmental → Aquatic → Freshwater → Lentic	55.08%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.39%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	5.08%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	50.00%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	38.14%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.39%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.69%
Aquatic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic	0.85%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.02%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.78%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	5.08%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	4.24%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.54%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	29.66%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	15.25%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	14.41%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	3.39%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	1.69%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.85%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300001850	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a	Environmental	Open in IMG/M
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300004693	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)	Environmental	Open in IMG/M
3300004805	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TBL_comb48_EPIDRAFT_10612314	3300000439	Freshwater	MTQEDIQKAWNLMSMHNSELLLENEQLKKQLMRQSLWYAIKRAFLIWRGKE*
RCM37_13502291	3300001850	Marine Plankton	MKQEDIQKAWDKLSMHNSELLLENEQLKKQLMRQSLWYAIKRAIRIWRGKE*
JGI24028J26656_10198482	3300002091	Lentic	MDEKAIQKAWNLMSMHNIELLLENEQLKKQLMRQSLWYAIKRAIRIWRGKE*
JGI24028J26656_10221183	3300002091	Lentic	MDKEAIQKAWNAMSMLNSELLLENEQLKKQLMRQSLWYAIKRAIRIWRGKE*
B570J29032_1097511195	3300002408	Freshwater	MKQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYSIIRAVRIWRNKE*
B570J40625_1008520694	3300002835	Freshwater	MDKEAIEKAWSLMSKHNSEILLENEELKKKLMRRSLWYAIKRAIRIWRGKE*
B570J40625_1009316433	3300002835	Freshwater	TGSQRVRRQKICVDDGRSNRMDNEAIQKAWNLMSMHNSELLLENEQLKKQLMRRSLWYAIKRAIRIWRGKE*
JGI25908J49247_100279924	3300003277	Freshwater Lake	MTPQTPEGLQKAWMLMSTHNSELLLENERLKRQLMQKSLWYALKRAVSIWRGKDA*
JGI25908J49247_101169622	3300003277	Freshwater Lake	MDKEAIQKAWNLMSMHNSELLLENEQLKKQLMRRSLWYAIKRAIRIWRGKE*
JGI26470J50227_10739672	3300003375	Freshwater	MTQEDIQKAWNLMSMHNSELLLENEQLKKQLMRQSLWYAIKRAIRIWRGKE*
Ga0065167_10197552	3300004693	Freshwater	MTQEEIQKAWNMLSMHNSELLLENERLKKQLMQQSLWYAIKRAIRIWRGKEYD*
Ga0007792_102764881	3300004805	Freshwater	VYTHPKDEVIQKAWNMMSMHNSELLLENEQLKKQLMRRSLWYAIKRAIKIWRGKEL*
Ga0068876_100022808	3300005527	Freshwater Lake	MDEKAIQKAWAMMSKHNNELLLENEELKKQLMRKSLWYAVKRAINIWRGKE*
Ga0068872_106590992	3300005528	Freshwater Lake	MMDEKAIQKAWAMMSKHNNELLLENEELKKQLMRKSLWYAVKRAINIWRGKE*
Ga0049081_1000053815	3300005581	Freshwater Lentic	MMDEKAIQKAWNMMSMHNSELLLENEQLKKQLMRRSLWYAIKRAINIWRGKDD*
Ga0049081_100324274	3300005581	Freshwater Lentic	MMDEKAIQKAWNMMSMHNSELLLENEQLKKQLMRQSFWYAIKRAINIWRGKE*
Ga0049081_100727216	3300005581	Freshwater Lentic	MDKEGIQKAWAMMSKHNNELLLENEELKKQLMRKSLWYAVKRAINIWRGKE*
Ga0049081_100814994	3300005581	Freshwater Lentic	MMDKEEIQKAWNMMSMHNSELLLENEQLKKQLMRRSLWYAIKRAINIWRGKE*
Ga0049081_101410675	3300005581	Freshwater Lentic	MDKEAIQKAWNLMSMYNSELLLENEQLKKQLMRRSLWYAIKRAIRIWRGKE*
Ga0049081_101589162	3300005581	Freshwater Lentic	MTQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKNTC*
Ga0049081_102830852	3300005581	Freshwater Lentic	MDEKAIQKAWDMMSMHNSELMLENEQLKKQLMRKSLWYAIKRAINIWRGKDA*
Ga0049080_1000015718	3300005582	Freshwater Lentic	MDEKAIQKAWNMMSMHNSELLLENEQLKKQLMRRSLWYAIKRAINIWRGKDD*
Ga0049080_100884404	3300005582	Freshwater Lentic	MDEEAIQKAWDMMSMHNSELMLENEQLKKQLMRKSLWYAIKRAINIWRGKDA*
Ga0049082_101163553	3300005584	Freshwater Lentic	MDEKAIQKAWDMMSMHNSELLLENEQLKKQLMRKSLWYAIKRAINIWRGKDA*
Ga0049084_101448513	3300005585	Freshwater Lentic	MDEKAIQKAWDMMSMHNSELLLENERLKKQLMRRSLWYAIKRAINIWRGKE*
Ga0104986_174930	3300007734	Freshwater	MRMKEVDEGVQKAWNMMSMHNSELLLENEALKKQLMRQSLWYAIKRAIRIWRGKE*
Ga0114340_10020941	3300008107	Freshwater, Plankton	EAIQKAWNMMSMHNSELLLENEQLKKQLMRQSFWYAIKRAINIWRGKE*
Ga0114343_10274975	3300008110	Freshwater, Plankton	MDEKAIQKAWDMMSMHNSELLLENEQLKKQLMRKSLWYAIKRAINIWRGKDD*
Ga0114841_11059565	3300008259	Freshwater, Plankton	MMDKEAIQKAWNMMSMHNSELLLENEQLKKRLMRQSLWYAIKRAINIWRGKE*
Ga0114364_100629410	3300008267	Freshwater, Plankton	MTQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKNT*
Ga0114962_100666512	3300009151	Freshwater Lake	MTDDLNKAWRLMSMHNSELLLENEALKKQLMQQSLWYSLKRAVRIWLGRE*
Ga0114962_104712533	3300009151	Freshwater Lake	MAMKQEDIQKAWNLMSMHNSELLLENEQLKKQLMRQSLWYAIKRALLIWRGKE*
Ga0114980_105125902	3300009152	Freshwater Lake	MMDEKAIQKAWNMMSMHNSELLLENEQLKKQLMRRSLWYAIKRAINIWRGKDA*
Ga0114963_1000573119	3300009154	Freshwater Lake	MDEEIKKAWNMISTHNSELLLENERLKKQLMRQSLWYAIKRAINIWRGKDA*
Ga0114968_107160001	3300009155	Freshwater Lake	MDKEAIQKAWNLMSMHNSELLLENERLKKQLMRRSLWYSIKRAIRIWRGKE*
Ga0114977_100056513	3300009158	Freshwater Lake	MMDEKAIQKAWNMMSMHNIELLLENEQLKKQLMRQSLWYAIKRAINIWRGKE*
Ga0114977_101932863	3300009158	Freshwater Lake	MNQDDIQKAWNLLSMHNSELLLENERLKQELMRRSLWYGIKRAFKIWLGREDE*
Ga0114959_101374001	3300009182	Freshwater Lake	MDEEIKKAWNMISTHNSELLLENERLKKQLMRQSLWYAIKRAINIW
Ga0114964_100057802	3300010157	Freshwater Lake	MTQEDIQKAWNLMSMHNSELLLENEQLKKQLMQRSLWYAIKRAFLIWRGKE*
Ga0114964_104415374	3300010157	Freshwater Lake	MKEVDEGVQKAWNMMSMHNSELLLENEALKKQLMRQSLWYAIKRAIR
Ga0133913_121057501	3300010885	Freshwater Lake	HKKGKGMTQDEIQKAWNTMSMHNSELLLENEQLKKQLMQRSLWYAIKRAFRIWRGKE*
Ga0133913_135898774	3300010885	Freshwater Lake	MKEVDEGVQKAWNMMSMHNSELLLENEALKKQLMRQSLWFALKRAIRIWRGKE*
Ga0139557_10783203	3300011010	Freshwater	MTQEDIQKAWNLMSTHNSELMLENERLKRQLMQKSLWYALKRAVSIWRGKDA*
Ga0151514_1023010	3300011115	Freshwater	MDNEAIQKAWKLMSMHNSELLLENEQLKKQLMRRSLWYSIKRAIKIWRGKE*
Ga0153800_10090032	3300011995	Freshwater	MMDKEAIQKAWNMMSMHNSELLLENEQLKKQLMRQSFWYAIKRAINIWRGKE*
Ga0157497_10299693	3300012664	Freshwater	MTQEDIQKAWNLLSQHNSELLLENEQLKKQLMQRSFWYAITRAIRIWRGKE*
Ga0164293_101615214	3300013004	Freshwater	MTQEDIQKAWNLMSTHNSELMLENERLKQRLMQRSLWYALKRAINIWRGKNTC*
Ga0136642_11898192	3300013285	Freshwater	MKMKEVDEGVQKAWNMMSMHNSELLLENERLKKQLMQQSLWYAIKRAYLI
Ga0177922_103677521	3300013372	Freshwater	NMMDKEAIQKAWNMMSMHNSELLLENEQLKKQLMRRSFWYAIKRAINIWRGKE*
Ga0177922_103920873	3300013372	Freshwater	MDEKAIQKAWDMMSMHNSELMLENEQLKKQLMRKSLWYSIKRAINIWRGKDA*
Ga0177922_104740515	3300013372	Freshwater	MDKEAIQKAWNLMSMHNSELLLENEQLKKQLMRRSLWYAIKRAIRIW
Ga0177922_109882891	3300013372	Freshwater	MDEEAIQKAWDMMSMHNSELMLENEQLKKQLMRKSLWYAIKRAINIWRGKDS*
Ga0119960_10025253	3300014811	Aquatic	MTKEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGRNT*
Ga0181338_10093436	3300015050	Freshwater Lake	MDKEAIQKAWNLMSMHNSELLLENEQLKKRLMRRSLWYAIKRAIRIWRGKE*
Ga0181350_10228913	3300017716	Freshwater Lake	MDEKAIQKAWDMMSMHNSKLLLENERLKKQLMRRSLWYAIKRAINIWRGKDD
Ga0181352_10159665	3300017747	Freshwater Lake	MDKEAIQKAWNLMSMHNSELLLENERLKKQLMSRSLWYSIKRAIRIWRGKE
Ga0181352_10461311	3300017747	Freshwater Lake	ICVEDGGNKMDKEAIEKAWSLMSKHNSEILLENEELKKKLMRRSLWYAIKRAIRIWRGKE
Ga0181344_10098733	3300017754	Freshwater Lake	MTQEDIQKAWNLMSKHNSDLMLENEELKKRLMRVSFWYSMKRAYLIWRGKE
Ga0181344_10293646	3300017754	Freshwater Lake	MKQEDIEKAWRLMSMHNSELMLENEQLKKQLMRKSFWYAIKRAILIWRGKE
Ga0181344_11129971	3300017754	Freshwater Lake	MDKEAIQKAWNLMSMYNSELLLENEQLKKQLMRRSLWYAIKRAIRIWRGRE
Ga0181344_11417222	3300017754	Freshwater Lake	MDEKAIQKAWDMMSMHNSELLLENEQLKKQLMRKSLWYAIKRAINIWRGKE
Ga0181344_12155932	3300017754	Freshwater Lake	MTQEEIEKAWRLMSMHNSELLLENEALKKQLMRKSLWYSIKRAFLIWSGKE
Ga0181343_11398761	3300017766	Freshwater Lake	MKQDDIEKAWKLMSMHNSELLLENERLKKQLMRQSLWYTIKRAYRIWTGKEKS
Ga0181343_11774913	3300017766	Freshwater Lake	MDEKAIQKAWDMMSMHNNELMLENEQLKKQLMRKSLWYAIKR
Ga0181343_11830722	3300017766	Freshwater Lake	MDEEAIQKAWNLMSMHNSELLLENEQLKKELMRRSLWYAIKRAINIWRGREA
Ga0181358_11265684	3300017774	Freshwater Lake	LLSMHNTELMLENERLKRQLMQKSLWYALKRAVNIWRGKDL
Ga0181357_100319114	3300017777	Freshwater Lake	MTKEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRA
Ga0181357_10409471	3300017777	Freshwater Lake	RRDAMDEKAIQKAWDMMSMHNSELLLENERLKKQLMRRSLWYAIKRAINIWRGKDD
Ga0181357_10818324	3300017777	Freshwater Lake	MMDKEAIQKAWNMMSMHNSELLLENEQLKKRLMRQSLWYAIKRAINIWRGKE
Ga0181357_12438672	3300017777	Freshwater Lake	MDEAAIQKAWNLMSMHNSELLLENEQLKKELMRRSLWYAIKRAINIWRGREA
Ga0181357_12455961	3300017777	Freshwater Lake	MSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKNT
Ga0181349_10625755	3300017778	Freshwater Lake	MTEEAIQKAWALLSMHNTELMLENERLKRQLMQKSLWYALKRAVNIWSGKDL
Ga0181346_13360712	3300017780	Freshwater Lake	MDEEAIQKAWAMMSMHNSNLLLENEELKKQLMLQSLWYAIKRAISIWRGKE
Ga0181348_11865861	3300017784	Freshwater Lake	QEDIQKAWNLMSTHNSELMLENERLKQQLTQRSLWYALKRAINIWRGKNT
Ga0181355_13424361	3300017785	Freshwater Lake	MDEKAIQKAWNMMSMHNSELLLENEQLKKQLMRRSLWYAIKRAINIWR
Ga0181359_10161013	3300019784	Freshwater Lake	MDKEAIQKAWNLMSMHNSELLLENEQLKKRLMRRSLWYAIKRAIRIWRGKE
Ga0181359_10798604	3300019784	Freshwater Lake	MTPQTPEGLQKAWMLMSTHNSELLLENERLKRQLMQKSLWYALKRAVSIWRGKDA
Ga0181359_11527163	3300019784	Freshwater Lake	MTQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKNT
Ga0208600_10496771	3300020550	Freshwater	GEHMTQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKNT
Ga0214206_10000832	3300021131	Freshwater	MTQEDIQKAWNLMSMHNSELLLENEQLKKQLMRQSLWYAIKRAFLIWRGKE
Ga0214166_100816410	3300021139	Freshwater	MTQEDIQKAWNLMSMHNSELLLENEQLKKQLMRQSLWYAIKRAIRIWRGKE
Ga0194048_100011006	3300021519	Anoxic Zone Freshwater	MDEKAIQKAWNMMSMHNSELLLENEQLKKQLMRQSLWYAIKRAINIWRGKE
Ga0194048_100637897	3300021519	Anoxic Zone Freshwater	MTQEEIQKAWNMLSMHNSELLLENERLKKQLMQQSLWYAIKRAIRIWRGKKYD
Ga0181354_10880625	3300022190	Freshwater Lake	MDKEAIQKAWNLMSMHNSELLLENEQLKKQLMRRSLWYAIKRAIRIWRGKE
Ga0181351_10622374	3300022407	Freshwater Lake	MTQEDIQKAWNLMSTHNSELMLENERLKQQLTQRSLWYALKRAINIWRGKNT
Ga0181351_12332403	3300022407	Freshwater Lake	KTQGEEHMTKEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKNT
Ga0214917_1000082631	3300022752	Freshwater	MDEGIQKAWNLMSMHNSELLLENEQLKKELMRKSLWYAIKRAINIWRGRE
Ga0214919_105943703	3300023184	Freshwater	MDEGIQKAWNLMSMHNSELLLENEQLKKQLMRKSLWYAIKRAIRIWRGKE
Ga0208103_10159473	3300025436	Freshwater	MTQEEIQKAWNMLSMHNSELLLENERLKKQLMQQSLWYAIKRAIRIWRGKEYD
Ga0208974_10023644	3300027608	Freshwater Lentic	MMDEKAIQKAWNMMSMHNSELLLENEQLKKQLMRRSLWYAIKRAINIWRGKDD
Ga0208960_10506303	3300027649	Freshwater Lentic	MDEKAIQKAWDMMSMHNSELLLENERLKKQLMRRSLWYAIKRAINIWRGKE
Ga0208975_10079082	3300027659	Freshwater Lentic	MMDKEGIQKAWAMMSKHNNELLLENEELKKQLMRKSLWYAVKRAINIWRGKE
Ga0208975_10262074	3300027659	Freshwater Lentic	MTQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKNTC
Ga0208975_11628421	3300027659	Freshwater Lentic	DGRKSKMDKEAIQKAWNLMSMYNSELLLENEQLKKQLMRRSLWYAIKRAIRIWRGKE
Ga0208975_11865862	3300027659	Freshwater Lentic	MMDKEEIQKAWNMMSMHNSELLLENEQLKKQLMRRSLWYAIKRAINIWRGKE
Ga0209442_10257376	3300027732	Freshwater Lake	MDKEAIQKAWNLMSMHNSELLLENEQLKKRLMRKSLWYAIKRAIRIWRGKE
Ga0209297_10000855	3300027733	Freshwater Lake	MMDEKAIQKAWNMMSMHNIELLLENEQLKKQLMRQSLWYAIKRAINIWRGKE
Ga0209297_13082952	3300027733	Freshwater Lake	MNQDDIQKAWNLLSMHNSELLLENERLKQELMRRSLWYGIKRAFKIWLGREDE
Ga0209085_100139424	3300027741	Freshwater Lake	MDEEIKKAWNMISTHNSELLLENERLKKQLMRQSLWYAIKRAINIWRGKDA
Ga0209972_1002718413	3300027793	Freshwater Lake	MDEKAIQKAWAMMSKHNNELLLENEELKKQLMRKSLWYAVKRAINIWRGKE
Ga0209990_1000082148	3300027816	Freshwater Lake	MMDEKAIQKAWAMMSKHNNELLLENEELKKQLMRKSLWYAVKRAINIWRGKE
Ga0247722_102758402	3300028027	Deep Subsurface Sediment	MTPQTPEGLQKAWALLSMHNSELLLENEELKQRLMKKSLWYAITRAIRIWRNKE
Ga0304729_100089031	3300028392	Freshwater Lake	MRMKEVDEGVQKAWNMMSMHNSELLLENEALKKQLMRQSLWFALKRAIRIWRGKE
Ga0304729_10517656	3300028392	Freshwater Lake	MTQEDIQKAWNLMSMHNSELLLENEQLKKQLMQRSLWYAIKRAFLIWRGKE
Ga0304728_10921361	3300028393	Freshwater Lake	MTDDLNKAWRLMSMHNSELLLENEALKKQLMQQSLWYSLKRAVRIWLGRE
Ga0315909_104935051	3300031857	Freshwater	MTQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRA
Ga0315909_109994741	3300031857	Freshwater	MMDEKAIQKAWNVMSMHNSELLLENEQLKKQLMRQSFWYAIKRAINIWRGKE
Ga0315905_100832627	3300032092	Freshwater	MDEEAIQKAWDMMSMHNSELMLENEQLKKQLMRKSLWYAIKRAINIWRGKE
Ga0334994_0000997_16278_16457	3300033993	Freshwater	MAKGGEHMTQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKNT
Ga0334979_0072282_244_405	3300033996	Freshwater	MTQEDIQKAWNLMSTHNSELMLENERLKQRLMQRSLWYALKRAINIWRGKNTC
Ga0335005_0512385_440_622	3300034022	Freshwater	MAKGEEHMTQEDIQKAWNLMSTHNSELMLENERLKQRLMQRSLWYALKRAINIWRGKNTC
Ga0334995_0000868_16563_16718	3300034062	Freshwater	MKQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYSIIRAVRIWRNKE
Ga0335012_0218844_67_228	3300034093	Freshwater	MMDEKAIQKAWNMMSMHNSELLLENEQLKKRLMRQSLWYAIKRVINIWRGKDA
Ga0335012_0481750_151_309	3300034093	Freshwater	MKQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKNT
Ga0335029_0775711_1_153	3300034102	Freshwater	MTQEDIQKAWNLMSTHNSELMLENERLKQQLMQRSLWYALKRAINIWRGKN
Ga0335036_0077905_506_661	3300034106	Freshwater	MDNEAIQKAWNLMSMHNSELLLENEQLKKQLMRRSLWYAIKRAIRIWRGKE
Ga0335036_0083208_120_278	3300034106	Freshwater	MTQEDMQKAWNLLSMLHSELMLENEQLKRQLMQKSLWYALKRAVNIWRGKDV
Ga0335036_0238877_223_378	3300034106	Freshwater	MDKEAIEKAWSLMSKHNSEILLENEELKKKLMRRSLWYAIKRAIRIWRGKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075693

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences