Scaffold Ga0209297_1000035

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000035
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115006
• Total Scaffold Genes: 184
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 140 (76.09%)
• Novel Protein Genes: 35
• Novel Protein Genes with Ribosome Binding Sites (RBS): 28 (80.00%)
• Associated Families: 35

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000263	Metagenome / Metatranscriptome	1424	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000671	Metagenome / Metatranscriptome	945	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001280	Metagenome / Metatranscriptome	732	Y
F001464	Metagenome / Metatranscriptome	689	Y
F001562	Metagenome / Metatranscriptome	670	Y
F003408	Metagenome / Metatranscriptome	488	Y
F003422	Metagenome / Metatranscriptome	487	Y
F004431	Metagenome / Metatranscriptome	438	Y
F004840	Metagenome / Metatranscriptome	421	Y
F005741	Metagenome / Metatranscriptome	391	Y
F008245	Metagenome / Metatranscriptome	336	N
F008357	Metagenome / Metatranscriptome	334	Y
F010085	Metagenome / Metatranscriptome	308	Y
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F017134	Metagenome / Metatranscriptome	242	Y
F017995	Metagenome / Metatranscriptome	237	Y
F019325	Metagenome / Metatranscriptome	230	Y
F021988	Metagenome / Metatranscriptome	216	Y
F038241	Metagenome / Metatranscriptome	166	Y
F038675	Metagenome / Metatranscriptome	165	Y
F042904	Metagenome / Metatranscriptome	157	Y
F047059	Metagenome / Metatranscriptome	150	Y
F053291	Metagenome / Metatranscriptome	141	N
F060917	Metagenome / Metatranscriptome	132	Y
F066776	Metagenome / Metatranscriptome	126	Y
F074872	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_1000035101	F053291	GAG	MITTQELIDYMYDDNLTHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC
Ga0209297_1000035102	F038241	GGAGG	MLGYTKTDLDEMGNACHDAKLFYIMKSDVTHVDQDPLVEGLLKAQDFLEGLWAEGYFD
Ga0209297_1000035103	F047059	GGAGG	LTKSSAFIEYMKIHLISLNQDLEDARNNVALNEDEYFESDNFYMGAIDATEHLLSVATDIMNSTNERV
Ga0209297_1000035104	F000263	AGG	MNAEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLADAIEREEETEEAMDSMVRTECEGHLDALVALYELTYQLSFAIGARTL
Ga0209297_1000035106	F000441	AGGAGG	MKMSDRYVNDQLNTAQKLLWGGSETENIEAHNIIAKLIKDREDLIENS
Ga0209297_1000035107	F000852	AGGAG	MATKREYLKSQGITVGVRGRFSGAAKVALAEAAAKGITFTAEVPAGKAK
Ga0209297_100003511	F001464	N/A	MARQKRNHVRKAFLYFFLNNKIHKVLRSSRAKDELVAWVYEDKKRVMYSYSQVEKNMESAYTMTQVASILNKHRVTIHDYILEGKVKTPQKIYSIGNGNDSKWSKYMFNQSDILGIHEYILDSGHSSELPSKAEILALLKTNLILYTKTAEGKFVPVWKAE
Ga0209297_1000035114	F060917	N/A	VIFTGQQVLQDMETNNMIDWLVNKIFRFTSLREAIFEEVHMYDHLKGIMRDPEAMQTASLSWCEGDTWYGWTYNDKLNRYYFDDIGNNSLMGLWEDEWLRKAEMVE
Ga0209297_1000035127	F021988	N/A	MSNFQKDDGTGTTPPPNGGAAGSVTSREATRKNPKQGMVVDRNKHGVYVETSLIPKAPKKTGRKKI
Ga0209297_1000035128	F001280	N/A	MCIECGCEAFGSSTGVIPVEVTDVSRDGEAGLTLSMTSTPEQTRQFINE
Ga0209297_1000035136	F042904	GAGG	MADLTVMDEIIGEVAEGLYKKWSSALPEDEKNQQAFSAMSKNAHETTLFVIQEFMNKFNAAAEELKDQ
Ga0209297_1000035142	F000671	AGGA	MEKVLCYCCNKTKNKLIARKSSLLSINLLMCETCIVSKFEPRWVVILSGRQFGPETVREYVIKKRYCGNEISASELLV
Ga0209297_1000035144	F011394	N/A	MFIDKNKNHFEHGINQWTGEPIKPVFYTKEMAKKVREIKSPAADLRLDMVKYPEFIAIRLYEDNFSKYDGSMKLRVIEYVEMVKKIVESYGVRCELEGVPSGRKT
Ga0209297_1000035146	F066776	GAG	MLHLTEKGVEIFIKKSQTPKQESFWNNYDLVIWKKDNGGYSDIKGMFRKNAWGKTEKISVNKNGIWMLPKRYVKYFK
Ga0209297_1000035149	F014140	N/A	MNKYSIKLDIEVEVEAFNSEDAKEYIHDIFNIDDEIKKVNILKIITK
Ga0209297_1000035169	F000376	AGGA	MSEYQEKAKLCKCCSKHVPLPTVLREYEGITVCPTTFSNILEYKRIWQSFESRPPGSVRKHFSEYVQQIIESTIDKTKEQTI
Ga0209297_1000035171	F000369	AGAAG	MTNEIEPAVHFDRMNKVVEELLKGNSATQIATLTGFSRKEVLEFIDEWKIVVHNDTNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLSVKSASLKLIADIETKRISMLQSIGVLENTQIASQIAETERKQEVLVGILKEVTAGCSKCKMDVAKRLSQITGIVESVVIEDANVV
Ga0209297_1000035174	F038675	AGG	MKLYQSKDWLYRRYVVQKKSITEIAKECNVSAMTIQRHVEQFGLGKKK
Ga0209297_1000035178	F008245	AGG	MTEDKNTLELISNITEFNDLHEFMQDEHLDKALSIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS
Ga0209297_100003524	F003408	AGAAG	MPELIQTLKSMTKTEEDKRIFLAAIQGIELGKDKEETEGPTFDDVRLKALGIEASKDDIVSLQGQIAAESGFGIGAGLGYSKE
Ga0209297_100003527	F000258	GGAG	MTNYKLDVTSDIRKYLWAQLKRHNVFDVHDYYIDSLDKEIIPIIPVQQQPELNQFLSGKKHIVYDKINMSYDSLWAICEEQILFCIYATDISEINEIRNLMVDLFRRMDESARDINRSGEISNTFKFHTITMIDISPVSPSEEIQGFLGTDIVLEVKYSRESNSAGRFI
Ga0209297_100003554	F008357	AGGAG	MAGQKNFEVDQNATFSFIVEYKDNNGNAIDLTGASAKMQIRDTKGGAKLAVTLTSPSGGIVLDAPNGKLTIKMTPTQTNKLFYPKSSYDIMVIDSNANKIKLLEGFMTLNRSVTI
Ga0209297_100003559	F010085	AGG	MQKIQYVSKYISLSEEGLVPRLECPMDQGFLLPNQTHNDIIFLYCLSCDYTNYIGATFYQDLVEKVNKNESEPNSIF
Ga0209297_100003571	F019325	AGGAG	MTQLTETIYSTIVHEFHNGGVKSSYGLDAYTRKALLRDLLSSKACYCINCISKEVK
Ga0209297_100003574	F004431	GGAG	MTITYSLWDGAQFLGFFTATSADEMLKVVEDLQKVSKNVVAHLRKVEQN
Ga0209297_100003577	F001562	AGGAG	LRSELEKDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAELEDET
Ga0209297_100003579	F000447	AGG	MGYIEFARINEEGVSWVDLSEATPDELFNIEIGLLNEGAFE
Ga0209297_100003580	F017995	AGG	MSKMKEYIEIIAANCDECGGAGFVFFGDENNYDVEPCDCIAEISDELTVDWVNE
Ga0209297_100003581	F004840	N/A	MYKITIAYDSNTPHWTKPYNDEMEAWKDFFSFTDWGFANEFSTVNIYTPAGKCYTKVFYREGRKVVTK
Ga0209297_100003584	F017134	GGAG	MELFHVACLNYEICGAEETFGSIEEYEIYGDDYICAECYDSEEMEFYELTGWADSDALASAGHGMDEDY
Ga0209297_100003589	F074872	AGG	MSDPNAIILTYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSDSALTGA
Ga0209297_100003591	F005741	AGG	MANRFRIEIYDANKLNDVTIYSEQGIDKEYLTELVFSNIKNFNGKVSAYVYDSLKKKKTTAMFLNEDTVAFAKSKSPALTK
Ga0209297_100003594	F003422	GGA	MSVGSCIILFMTNELISSKYTFICDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIQPTNQTKEEKMEETTVGTINDLLTPYNPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNARTNSKAVSAIQNKISLVKDIITEAYADSLDQETLQAIAEALEIQLTREVEWSATIEVSGTLTIDLLESTVDDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN
Ga0209297_100003596	F001043	AGGAG	MSDYKDGFQDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGNQL
Ga0209297_100003598	F001125	GGCGG	MGDRANFGFTDSKGDTLYLYGHWAGYQMLANLATAVEAARGRWTDESYATRICVSQLIGAQWPQETGWGLSINRLGDNEHKVPVINWQARTFTLYEEDLTTEVFHTSLDAFVSKYSQPVM