Scaffold Ga0209599_10001317

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10001317
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12131
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (73.53%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002060	Metagenome / Metatranscriptome	597	Y
F006846	Metagenome / Metatranscriptome	363	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014017	Metagenome / Metatranscriptome	266	Y
F014140	Metagenome / Metatranscriptome	265	Y
F016396	Metagenome / Metatranscriptome	247	Y
F028166	Metagenome / Metatranscriptome	192	Y
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000131712	F001280	GAGG	MCIECGCEALGSETGIIPVAITDVSRDGESGLTLNMTSTPEQTRQFINE
Ga0209599_1000131713	F088905	N/A	MSDNTKDIDTTPVVEVKEEVKAEPKAEAKSAPVADSTDYWANAWANRGV
Ga0209599_1000131714	F028166	AGGAG	MTNGNDLTGFNEVKGGDTNNLDLNPTGQAPAAAFPAEDKSTQDGSGLGQNGK
Ga0209599_1000131716	F014017	AGG	MEKIQDYLDEKHRKKIADEIRYLELPPEWRPYEVIRYIVRIIEKQNG
Ga0209599_1000131721	F016396	GAGG	MRKSERLRLLEIHMVRLEMMVELYSQSLTNLLESQGLKAPTDLDAGKWYKAKLDQKDTE
Ga0209599_1000131724	F002060	AGG	MQINYLSILIAISAALVSGMGTAIIASFRDSKKEERRRVERDQDLLKMDLKDLKIELYKIEKELSDWKDKYYNAIQELIEIKSELEATLIQLAHYDHDIDELDR
Ga0209599_1000131725	F000671	GGA	MEKILCYCCNKSKNKLAVKKSTLLPINLFLCETCISNKFEPRWVIILSGRQLGPEAVKDFIVKKRYIGTDIAASELFV
Ga0209599_1000131727	F000473	AGG	MEFINKDKDHFKYGINQWTGEPNKPVFYNKEMALALRGIKKPVIDLQMDVVKYPEFLCLRLYEDNFVKYTGNTKEMVIDYLQKVKKLIESYGVRCELEGVPSQRVIGQGL
Ga0209599_1000131729	F012975	GGAG	VLNLTLKGVEVFIERSKTKSQESYWENYDLLIWKQSAGGFTDVKGMFRKDQWGVTERIPVNENGIWKLPAKYVRHFR
Ga0209599_1000131731	F014140	N/A	MDVELEVTAFNETDARDYVGDIFNIDDEIKKVNITKITEKSK
Ga0209599_100013177	F006846	AGGA	MIINLVEKYLMRPKRLREAIEAVVHDNDELLRIIKEYEENDTPTNLTWSEGDTWYGWTYNTKLKRYFFDDIGNTSLMGLWEDQWAREAESEKKDMFENQVDFE