NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000195

Scaffold Ga0209599_10000195


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000195 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42819
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (88.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F003379Metagenome / Metatranscriptome490Y
F003690Metagenome / Metatranscriptome473Y
F010085Metagenome / Metatranscriptome308Y
F051704Metagenome / Metatranscriptome143Y
F080026Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100001951F001562GGGGGMNKSQFEKDLEIKESFIDFLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELENE
Ga0209599_1000019510F080026GAGGMKLMAYSQEQMDFAHKVVVRLMEILKVCPNVDDKYRCHTPTQKPHQRCVDLMVLLAEITNLPEYLVYLGNNEETKVDPYGWILAYPPAEAIVQGELNNDTKVVDLE
Ga0209599_1000019513F010085AGTAGGMQIQYVSKYIALSEEGLVPRLECPMDQGSLLCNQDLEDNIYLYCLSCEYKNNIGLEVYRRIVNEVNNV
Ga0209599_100001952F003690GGAMITDGLELYITTDYGIELDSFLGAIYLPWHTIAIITALTIAYKIYKRKKNK
Ga0209599_100001958F051704AGGAMHDHENIVLATGSGITEMQLMWIIMGAMAIHHIWMWWNMKKKNCNCK
Ga0209599_100001959F003379N/AMKKIYALITLTATAVFSGLAMSKFLNWAGNQEIFDFDLNEDIDNEQF
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