Scaffold Ga0209599_10000189

Overview

Basic Information

• Taxon OID: 3300027710
• Scaffold ID: Ga0209599_10000189
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43138
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (85.33%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F004006	Metagenome / Metatranscriptome	457	Y
F028150	Metagenome / Metatranscriptome	192	Y
F037227	Metagenome / Metatranscriptome	168	Y
F080044	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000018913	F001176	GAG	MSDDGTGMVTPPNSEPSGAVTSQEVGRKKPSQGKFHSGPRPPTKIDRNKHGIRRETTFGPKKTKPKKV
Ga0209599_1000018914	F001280	AGGAG	MCIECGCESVGSESGIANIPGGILDTSRDGEAGLTLNMTATPEQRESFINE
Ga0209599_1000018922	F037227	AGG	MANNQVTVLEGIIEDISIELYQKLWNAIPAEEQNEESSKAIGLNSKETTLFIIQRFMDKFNAAAEELKDK
Ga0209599_1000018927	F002060	N/A	MTIDPISLIIPICTALLGGVGASLLSGRREYKKEQIRQKEREQDHLKIELKDLKLALYKLERDLTEWKDKYYGAIQELISVKSELEETLIKLTFIDHKIDDMNRLD
Ga0209599_1000018928	F000671	AGGA	MEKILCYSCNKSKNKLNVRKSALLPINLLMCESCISGKLEPRWVLILSGRQNGSDSVKEFIIKKKYLGQEITAAELLV
Ga0209599_1000018934	F003582	N/A	MNNYRIKIEVDAEVQAFSENDAVDYVNDIFGIDEEIKNIKVVSVKEK
Ga0209599_1000018938	F028150	AGGGGG	MNWLKKRAIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFMTIGIREKAEKEEE
Ga0209599_1000018944	F000376	AGGA	MSEYQDRAKECKCCGKHVPLPTVLKEYNGIVMCPTTFANVVEYKRIWKNLGVRPQGNVRKHFSEYVQQIVEQTIDKNEDGSLQ
Ga0209599_1000018946	F000369	N/A	MELELADHFDRMNKVVSELLKGNNPTQISTITGLQRKDVVELIDEWKQVVRNDNTARERAKEAINGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAEIASQVAESERKQEVLVKILKEVTAQCPKCKMEVAKRLSQITGVVESIVIEDAGGS
Ga0209599_1000018957	F080044	GAGG	MPNLDEFLNEDKEEIKHYDLEDLPGVRACSKCDEDVSGAKWDPIDLVMSWRCSKGHETIFKVQ
Ga0209599_1000018960	F004006	AGGA	MTDDIEGLVTSISINQVLVAILEEHGKLTVPTLKFLESSAAEKELVIDYDETIPSFTFSLREKDGNE
Ga0209599_1000018967	F001464	GGA	MDDQQRIECICQMVRSKRQRTRKKLLYFFLNGKIHKVIRTSKARDELVAWCYPDKKRVMYAYSQVKKNMGNAYSIKNVCEILNRHRVTVEEYILQGKIKEPQRVYPISNPDSTWYKFMFSESDIYDLHQFILDAGYTKDFPSKAELTALLKHNLILYTKTDEGSFVPVWKAE